Publications

2016

Thumu S. C. R., Jain M., Soman S., Das S., Verma V., Nandi A., Gutmann D. H., Jayaprakash B., Nair D., Clement J. P., Marathe S., Ramanan S. , ( 2024 ), SRF-deficient astrocytes provide neuroprotection in mouse models of excitotoxicity and neurodegeneration , eLife , 13:e95577 , 1-28

Chandrasekaran A. N., Vermani A., Gupta P., Steinmetz N., Moore T., Devarajan S. , ( 2024 ), Dissociable components of attention exhibit distinct neuronal signatures in primate visual cortex , Science Advances , 10(5) , 1-15 (Media coverage: Hindu | Times of India)

Priyanka Gupta, Devarajan Sridharan , ( 2024 ), Presaccadic attention does not facilitate the detection of changes in the visual field , PLOS Biology , 22(1) , 1-28

Das A, Nandi N and Ray S , ( 2023 ), Alpha and SSVEP power outperforms Gamma power in capturing Attentional Modulation in Human EEG , Cerebral Cortex

S Kedia, K Mandal, PR Netrakanti, M Jose, SS Sisodia, and D Nair , ( 2021 ), Nanoscale organization of Nicastrin, the substrate receptor of the γ-secretase complex, as independent molecular domains , Molecular Brain , 14(1)

Belapurkar V., Swamy M.H.S, Singh, N., Kedia S., Gangi Setty S.R., Jose M., Nair D. , ( 2023 ), Real time heterogeneity of supramolecular assembly of Amyloid Precursor Protein is modulated by an endocytic risk factor PICALM. , Cellular and Molecular Lifesciences , 80

Chakravarthula LN and Padmala S , ( 2023 ), Negative emotion reduces the discriminability of reward outcomes in the ventromedial prefrontal cortex , Social Cognitive and Affective Neuroscience , 18(1) , 01-10

Prannay Reddy, Jayesh Vasudeva, Devanshi Shah, Jagat Narayan Prajapati, Nikhila Harikumar, Arnab Barik. , ( 2023 ), A Deep-Learning Driven Investigation of the Circuit Basis for Reflexive Hypersensitivity to Thermal Pain , Neuroscience , 530 , 158-172

Jensen K.T., Kadmon Harpaz N., Dhawale A.K., Wolff S.B.E., Ölveczky B.P. , ( 2022 ), Long-term stability of single neuron activity in the motor system , Nature Neuroscience , 25 , 1664–1674.

Aggarwal S and Ray S , ( 2023 ), Slope of the power spectral density flattens at low frequencies (<150 Hz) with healthy aging but also steepens at higher frequency (>200 Hz) in human electroencephalogram , Cerebral Cortex Communications , Vol 4(2) , tgad011

Krishnakumaran R and Ray S , ( 2023 ), Temporal characteristics of gamma rhythm constrain properties of noise in an inhibition-stabilized network model , Cerebral Cortex , 33 , 10108-10121

Kumar WS and Ray S , ( 2023 ), Healthy aging and cognitive impairment alter EEG functional connectivity in distinct frequency bands , European Journal of Neuroscience , 58 , 3432-49

Pramod R.T., Katti H and Arun S.P , ( 2022 ), Human peripheral blur is optimal for object recognition , Vision Research , 200 , : 108083

(pdf | lay summary on Twitter)

Arun S.P , ( 2022 ), Using compositionality to understand parts in whole objects , European Journal of Neuroscience , Trailblazers in Neuroscience series, in press

(pdf | lay summary on Twitter)

Passi A and Arun S.P , ( 2022 ), The Bouba–Kiki effect is predicted by sound properties but not speech properties , Attention Perception and Psychophysics , in press

(pdf | lay summary on Twitter)

Varsha V, Atul Gopal, Sumitash Jana, Radhakant Padhi, Aditya Murthy , ( 2023 ), Velocity tracking control best explains the modulation of saccade kinematics during eye-hand coordination. , Eur. J Neurosci.

D’Souza, N., Ramakrishna, S., Radhakrishna, .K., Jhaveri, V., Ravindran, S., Yeramala, L., Nair, D.,Palakodeti, D., Muddashetty, R.S , ( 2022 ), Function of FMRP domains in regulating distinct roles of neuronal protein synthesis , Molecular Neurobiology , 59(12) , 7370-7392

Haukedal, H.; Corsi, GI.; Gadekar, VP.;Doncheva, NT.; Kedia, S.; de Haan, N.; Chandrasekaran, A.;Jensen, P.; Schiønning, P.; Vallin, S.; Marlet, FR.; Poon, A.; Pires, C.; Agha, FK.; Wandall, HH.; Cirera, S.; Simonsen, AH.; Nielsen, TT.; Nielsen, JE.; Hyttel, P.; Muddashetty, R.; Aldana, B.; Gorodkin, J.; Nair, D.; Meyer, M.; Larsen, MR.; Freude, K. , ( 2023 ), Golgi fragmentation – One of the earliest organelle phenotypes in Alzheimer’s disease neurons , Frontiers in Neuroscience , 17

Mangalwedhekar, M., Singh, N., Thakur, C.S., Seelamantula, C.S., Jose, M., Nair, D. , ( 2023 ), Achieving nanoscale precision using Neuromorphic localization microscopy , Nature Nanotechnology , 18(4) , 380-389

( 2022 ), Perceptions on preprints, peer review and publication charges , Current Science , 123(10) , 1187 (Editorial)

Kiran K. Kolathur*©, Pallavi Sharma*, Nagesh Y. Kadam, Navneet Shahi, Ane Nishitha, Kavita Babu© , ( 2023 ), Pre-mRNA splicing function of the ubiquitin-like protein Hub1/UBL-5 in Caenorhabditis elegans , FEBS Letters , 597(3) , 448-457

Pratima Pandey©, Gazaldeep Kaur and Kavita Babu© , ( 2022 ), Crosstalk between neurons and glia through G-protein coupled receptors: Insights from Caenorhabditis elegans , Progress in Molecular Biology and Translational Science , 193(1) , 119-144

Vandita S. Bhat©, Jagannath Jayaraj and Kavita Babu© , ( 2022 ), RNA and neuronal function: the importance of post-transcriptional regulation , Oxford Open Neuroscience , Vol 1

Satya Rungta, Aditya Murthy. , ( 2023 ), Context-specific early recruitment of small motor units in the shoulder muscle reflects a reach movement plan. , J. Neurophysiology

Pattisapu S and Ray S , ( 2023 ), Stimulus-induced narrow-band gamma oscillations in humans can be recorded using open-hardware low-cost EEG amplifier , PLoS One , 18(1) , e0279881

Rajeev P., Singh N., Kechkar A., Butler C., Ramanan N., Sibarita J.B., Jose M., Nair D. , ( 2022 ), Nanoscale Regulation of Ca2+ dependent phase transitions and real time dynamics of SAP97/hDLG , Nature Communications , 13(1): 4236.

Chakravarthula LN and Padmala S. , ( 2022 ), Arousal-driven interactions between reward motivation and categorization of emotional facial expressions , Frontiers in Psychology (Emotion Science)

SG Dastidar, D Nair , ( 2022 ), A Ribosomal Perspective on Neuronal Local Protein Synthesis , Frontiers in Molecular Neuroscience , 18

AP Kumar, N Singh, D Nair, A Justin , ( 2022 ), Neuronal PET tracers for Alzheimer’s disease , Biochemical and Biophysical Research Communications , 587 , 58-62

Rajeev P., Singh N., Kechkar A., Butler C., Ramanan N., Sibarita J.B., Jose M., Nair D. , ( 2022 ), Nanoscale regulation of Ca2+ dependent phase transitions and real-time dynamics of SAP97/hDLG. , Nature Communications , 13(1)

Basu D., Sendhilnathan N. and Aditya Murthy , ( 2022 ), Neck muscle activity reflects neural patterns of sequential saccade planning in head-restrained primates. , Journal of Neurophysiology (accepted)

Shirhatti V, Ravishankar P and Ray S , ( 2022 ), Gamma oscillations in primate primary visual cortex are severely attenuated by small stimulus discontinuities , PLoS Biology , 20(6) , e3001666

Prakash SS, Mayo JP and Ray S , ( 2022 ), Decoding of attentional state using local field potentials , Current Opinion in Neurobiology , 76 , 102589

Katti H & Arun SP , ( 2022 ), A separable neural code in monkey IT enables perfect CAPTCHA decoding , Journal of Neurophysiology , 127: 869-884 , (lay summary on Twitter)

Agrawal A, Nag S, Hari KVS & Arun SP , ( 2022 ), Letter processing in upright bigrams predicts reading fluency variations in children , Journal of Experimental Psychology , General, in press , (lay summary on Twitter)

Pramod RT & Arun SP , ( 2022 ), Improving Machine Vision using Human Perceptual Representations: The Case of Planar Reflection Symmetry for Object Classification , IEEE Transactions in Pattern Analysis and Machine Intelligence , 44: 228-241 , (India Alliance lay summary)

Somraj N, Kashi MS, Arun SP, Soundararajan R , ( 2022 ), Understanding the perceived quality of video predictions , Signal Processing , Image Communication , 102:116626

Devanshi Piyush Shah and Arnab Barik , ( 2022 ), The Spino-Parabrachial Pathway for Itch , Front Neural Circuits , v.16

Liza K and Ray S , ( 2022 ), Local interactions between steady-state visually evoked potentials at nearby flickering frequencies , Journal of Neuroscience , 42(19) , 3965-74

Ray S , ( 2022 ), Spike-Gamma phase relationship in visual cortex , Annual Review of Vision Sciences , 8:1

Umer S. Bhat*, Navneet Shahi*, Siju Surendran* and Kavita Babu  , ( 2021 ), Neuropeptides and Behaviors: How Small Peptides Regulate Nervous System Function and Behavioral Outputs , Frontiers in Molecular Neuroscience , 14 , 786471

Anuradha Singh, Kavita Babu© and Pratima Pandey© , ( 2021 ), Ethanol Induced Sedative Behavior: An assay to investigate increased dopamine signaling in C. elegans , Bio-protocol , 11(13) , e4083

Murty DVPS and Ray S , ( 2022 ), Stimulus-induced robust narrow-band gamma oscillations in human EEG using cartesian gratings , Bio-protocol , 12(7) , e4379

Krishnakumaran R, Raees M, Ray S , ( 2022 ), Shape analysis of gamma rhythm supports a superlinear inhibitory regime in an inhibition-stabilized network , PLoS Computational Biology , 18 , e1009886

Kumar WS, Manikandan K, Murty DVPS, Ramesh RG, Purokayastha S, Javali M, Rao NP and Ray S , ( 2022 ), Stimulus-induced narrowband gamma oscillations are test-retest reliable in healthy elderly in human EEG , Cerebral Cortex Communications , 3(1) , tgab066

Meenakshi Prabod Kumar et al , ( 2022 ), Novel measures of Morris water maze performance that use vector field maps to assess accuracy, uncertainty, and intention of navigational searches , Hippocampus Accepted , (2021)

Shridhar, S. et al , ( 2022 ), A new paradigm for investigating temporal order memory shows higher order associations are present in recent but not in remote retrieval , Exp. Brain Res. 2021 1 , 1–19 (2022)

Deshmukh SS. 2021 , ( 2021 ), Distal CA1 Maintains a More Coherent Spatial Representation than Proximal CA1 When Local and Global Cues Conflict , Journal of Neuroscience , 41 (47): 9767-9781

Jacob G, Katti H, Cherian T, Das J, Zhivago KA & Arun SP , ( 2021 ), A naturalistic environment to study visual cognition in unrestrained monkeys , eLife , 10: e63816 , (lay summary on Twitter)

A G Ramakrishnan, , ( 2020 ), Cardiorespiratory and endocrine mechanisms behind the effectiveness of pranayama , in the book “Evidence-based Perspectives on the Psychophysiology of Yoga and Its Applications,” published by IGI Global, edited by Dr. Shirley Telles.

Neelam Sinha, Manojkumar Saranathan and A. G. Ramakrishnan , ( 2010 ), Dynamic MR imaging using generalized series , International Journal of Magnetic Resonance Imaging , 2(1) , 3-21.

Neelam Sinha, Manojkumar Saranathan and A. G. Ramakrishnan , ( 2010 ), Improved kt-BLAST for fast fMRI imaging , Journal of Magnetic Resonance, , 204 , 273-280

Neelam Sinha, A. G. Ramakrishnan and Manojkumar Saranathan, , ( 2010 ), Composite MR image reconstruction and unaliasing for general trajectories using neural networks , Magnetic resonance imaging , 28(10) , 1468-1484.

A Ramesh, C Jagdish, M Nagapoorinima, PN Suman Rao, AG Ramakrishnan, GC Thomas, M Dominic, A Swarnarekha, , ( 2012 ), Low cost calibrated mechanical noisemaker for hearing screening of neonates in resource constrained settings , The Indian journal of medical research , 135(2), , 170.

A. G. Ramakrishnan, A.P. Prathosh and T. V. Ananthapadmanabha, , ( 2014 ), Threshold-independent QRS detection using the dynamic plosion index , IEEE Signal Processing Letters , 21(5), , 554-558.

TP Jerrin, AG Ramakrishnan, , ( 2021 ), Decoding Imagined Speech from EEG using Transfer Learning , IEEE Access

Jain Ritika, Angarai Ganesan Ramakrishnan, , ( 2021 ), Reliable sleep staging of unseen subjects with fusion of multiple EEG features and RUSBoost , Biomedical Signal Processing and Control, , Vol. 70

Amit Meghanani, Anoop C S, and A G Ramakrishnan, , ( 2021 ), Recognition of Alzheimer’s dementia from the transcriptions of spontaneous speech using fastText and CNN models , Frontiers in Computer Science, DOI: 10.3389/fcomp.2021.624558.

A. G. Ramakrishnan and J. V. Satyanarayana, , ( 2016 ), Reconstruction of EEG from limited channel acquisition using estimated signal correlation , Biomedical Signal processing & Control , 27 , 164–173, doi:10.1016/j.bspc.2016.02.004.

Arnab Nandi, Garima Virmani, Aatmika Barve, Swananda Marathe , ( 2021 ), DBscorer: an open source software for automated accurate analysis of rodent behavior in forced swim test and tail suspension test , eNeuro (accepted).

Jose M.*, Sivanand A., Channakeshava C. , ( 2021 ), Cholesterol is a critical determinant for hippocampal neuronal polarity , Frontiers in Molecular Neuroscience , 14

Kedia S., Mandal K., Netrakanti P.R., Jose M., Sisodia S.S., Nair D. , ( 2021 ), Nanoscale organization of Nicastrin, the Substrate Receptor of the γ-Secretase Complex, as Independent Molecular Domains , Molecular Brain , 14(1):158

Akshay Jagatap, Hritik Jain, Simran Purokayastha, Devarajan Sridharan , ( 2021 ), Neurally-constrained modeling of human gaze strategies in a change blindness task , PLoS Computational Biology , (In press)

Basu D., Sendhilnathan N., Murthy A. , ( 2021 ), Neural mechanisms underlying the temporal control of sequential saccade planning in the frontal eye field. , Proc Natl Acad Sci U S A. , (accepted)

Kedia, S., and Nair, D. , ( 2020 ), Nanoscale rearrangement of APP organization as a therapeutic target for Alzheimer’s disease , Medical Hypotheses , 143

Marathe, P., Mahadeva Swamy, H.S., Nair, D, Bhattacharya, D. , ( 2020 ), mEosBrite are bright variants of mEos3.2 developed by semirational protein engineering , Journal of Fluorescence , 30(3) , 703–715.

Venkatesan, S., Subramaniam, S., Rajeev, P., Chopra, Y., Jose, M., and Nair, D. , ( 2020 ), Differential scaling of synaptic molecules within functional zones of an excitatory synapse during homeostatic plasticity , eNeuro , 7(2).

Kedia, S., Ramakrishna, P., Netrakanti, P.R., Jose, M., Sibarita, J.-B., Nadkarni, S., and Nair, D. , ( 2020 ), Real-time Nanoscale Organization of Amyloid Precursor Protein , Nanoscale , 12(15) , 8200-8215.

Koltun, B., Ironi, S., Gershoni-Emek, N., Barrera, I., Hleihil, M., Nanguneri, S., Sasmal, R., Agasti, S.S., Nair, D., and Rosenblum, K. , ( 2020 ), Measuring mRNA translation in neuronal processes and somata by tRNA-FRET , Nucleic Acids Research , 48(6) , e32

Venkatachalapathy, M., Belapurkar, V., Jose, M., Gautier, A., and Nair, D. , ( 2019 ), Live cell super resolution imaging by radial fluctuations using fluorogen binding tags , Nanoscale , 11(8) , 3626-3632.

Nanguneri, S., Pramod, R., Efimova, N., Das, D., Jose, M., Svitkina, T., and Nair, D. , ( 2019 ), Characterization of nanoscale organization of F-actin in morphologically distinct dendritic spines in vitro using supervised learning , eNeuro , 6(4).

Kommaddi, R.P., Tomar, D.S., Karunakaran, S., Bapat, D., Nanguneri, S., Ray, A., Schneider, B.L., Nair, D., and Ravindranath, V. , ( 2019 ), Glutaredoxin1 Diminishes Amyloid Beta-Mediated Oxidation of F-Actin and Reverses Cognitive Deficits in an Alzheimer’s Disease Mouse Model , Antioxidants & Redox Signaling , 31(18) , 1321-1338.

Kommaddi, R.P., Das, D., Karunakaran, S., Nanguneri, S., Bapat, D., Ray, A., Shaw, E., Bennett, D.A., Nair, D., and Ravindranath, V. , ( 2018 ), Aβ mediates F-actin disassembly in dendritic spines leading to cognitive deficits in Alzheimer’s disease , Journal of Neuroscience , 38(5) , 1085-1099.

Harper, C.B., Papadopulos, A., Martin, S., Matthews, D.R., Morgan, G.P., Nguyen, T.H., Wang, T., Nair, D., Choquet, D., and Meunier, F.A. , ( 2016 ), Botulinum neurotoxin type-A enters a non-recycling pool of synaptic vesicles , Scientific reports , 6(1)

Jose, M., Tollis, S., Nair, D., Mitteau, R., Velours, C., Massoni-Laporte, A., Royou, A., Sibarita, J.-B., and McCusker, D. , ( 2015 ), A quantitative imaging-based screen reveals the exocyst as a network hub connecting endocytosis and exocytosis , Molecular biology of the cell , 26 , 2519-2534.

Widera, D., Klenke, C., Nair, D., Heidbreder, M., Malkusch, S., Sibarita, J.-B., Choquet, D., Kaltschmidt, B., Heilemann, M., and Kaltschmidt, C. , ( 2016 ), Single-particle tracking uncovers dynamics of glutamate-induced retrograde transport of NF-κB p65 in living neurons , Neurophotonics , 3(4)

Chazeau, A., Mehidi, A., Nair, D., Gautier, J.J., Leduc, C., Chamma, I., Kage, F., Kechkar, A., Thoumine, O., and Rottner, K. , ( 2014 ), Nanoscale segregation of actin nucleation and elongation factors determines dendritic spine protrusion , The EMBO journal , 33(23) , 2745-2764.

Fraisier, V., Kasri, A., Miserey-Lenkei, S., Sibarita, J.-B., Nair, D., Mayeux, A., Bardin, S., Toyoda, Y., Poser, I., and Poznyakovskiy, A. , ( 2013 ), C11ORF24 is a novel type I membrane protein that cycles between the Golgi apparatus and the plasma membrane in Rab6-positive vesicles , PloS one , 8(12)

Nair, D., Hosy, E., Petersen, J.D., Constals, A., Giannone, G., Choquet, D., and Sibarita, J.-B. , ( 2013 ), Super-resolution imaging reveals that AMPA receptors inside synapses are dynamically organized in nanodomains regulated by PSD95 , Journal of Neuroscience , 33(32) , 13204-13224.

Kechkar, A., Nair, D., Heilemann, M., Choquet, D., and Sibarita, J.-B. , ( 2013 ), Real-time analysis and visualization for single-molecule based super-resolution microscopy , PLoS One , 8(4)

Jose, M., Tollis, S., Nair, D., Sibarita, J.-B., and McCusker, D. , ( 2013 ), Robust polarity establishment occurs via an endocytosis-based cortical corralling mechanism , Journal of Cell Biology , 200(4) , 407- 418.

Rossier, O., Octeau, V., Sibarita, J.-B., Leduc, C., Tessier, B., Nair, D., Gatterdam, V., Destaing, O., Albiges-Rizo, C., and Tampé, R. , ( 2012 ), Integrins β 1 and β 3 exhibit distinct dynamic nanoscale organizations inside focal adhesions , Nature cell biology , 14(10) , 1057-1067.

Hoze, N., Nair, D., Hosy, E., Sieben, C., Manley, S., Herrmann, A., Sibarita, J.-B., Choquet, D., and Holcman, D. , ( 2012 ), Heterogeneity of AMPA receptor trafficking and molecular interactions revealed by superresolution analysis of live cell imaging , Proceedings of the National Academy of Sciences , 109(42) , 17052-17057.

Heidbreder, M., Zander, C., Malkusch, S., Widera, D., Kaltschmidt, B., Kaltschmidt, C., Nair, D., Choquet, D., Sibarita, J.-B., and Heilemann, M. , ( 2012 ), TNF-α influences the lateral dynamics of TNF receptor I in living cells , Biochimica et Biophysica Acta (BBA)-Molecular Cell Research , 1823(10) , 1984-1989.

Izeddin, I., Boulanger, J., Racine, V., Specht, C.G., Kechkar, A., Nair, D., Triller, A., Choquet, D., Dahan, M., and Sibarita, J.B. , ( 2012 ), Wavelet analysis for single molecule localization microscopy , Opt Express , 20(3) , 2081-2095.

Jose, M., Nair, D.K., Altrock, W.D., Dresbach, T., Gundelfinger, E.D., and Zuschratter, W. , ( 2008 ), Investigating interactions mediated by the presynaptic protein bassoon in living cells by Foerster’s resonance energy transfer and fluorescence lifetime imaging microscopy , Biophysical journal , 94(4) , 1483-1496.

Jose, M., Nair, D.K., Reissner, C., Hartig, R., and Zuschratter, W. , ( 2007 ), Photophysics of Clomeleon by FLIM: discriminating excited state reactions along neuronal development , Biophysical journal , 92(6) , 2237-2254.

Nair, D.K., Jose, M., Kuner, T., Zuschratter, W., and Hartig, R. , ( 2006 ), FRET-FLIM at nanometer spectral resolution from living cells , Optics express , 14(25) , 12217-12229.

Lankipalli, S., Mahadeva Swamy, H.S., Selvam, D., Samanta, D., Nair, D.,Ramgopal, U. , ( 2021 ), Cryptic association of B7-2 molecules and its implication for clustering , Protein Science. , 30(9) , 1958-1973

Mandal,P., Belapurkar, V., Nair, D Ramanan, N. , ( 2021 ), Vinculin-mediated axon growth requires interaction with actin but not talin in mouse neocortical neurons , Cellular and Molecular Life Sciences online , 78 , 5807-5826

Tanwar,M., Kateriya,S., Nair, D., Jose,M. , ( 2021 ), Optogenetic modulation of real-time nanoscale dynamics of HCN channels using photoactivated adenylyl cyclases , RSC Chemical Biology , 2(3) , 863-875

Kedia, S., Ramakrishna, P., Netrakanti, P.R., Singh, N., Sisodia, S.S., Jose, M., Sathish Kumar, Mahadevan, A., Ramanan, N., Nadkarni, S., and Nair, D. , ( 2021 ), Alteration in synaptic nanoscale organization dictates amyloidogenic processing in Alzheimer’s disease , iScience, , 24(3)

Rungta S.P., Basu D., Sendhilnathan N. and Aditya Murthy. , ( 2021 ), Preparatory activity links frontal eye field activity with small amplitude motor unit recruitment of neck muscles during gaze planning , J. Neurophysiology

Jain M, Das S, Lu PPY, Virmani G, Soman S, Thumu SCR, Gutmann DH, Ramanan N , ( 2021 ), SRF is required for maintenance of astrocytes in non-reactive state in the mammalian brain , Eneuro , 8(1).

Sethi P, Virmani G, Gupta K, Thumu SCR, Ramanan N, Marathe S. , ( 2021 ), Automated morphometric analysis with SMorph software reveals plasticity induced by antidepressant therapy in hippocampal astrocytes , Journal of cell science , 134(12) , jcs258430

Meenakshi Prabod Kumar; Suraj Kumar; Balaji Jayaprakash , ( 2021 ), In vivo Imaging of Immediate Early Gene expression dynamics segregates neuronal ensemble of memories of dual events , Molecular Brain , 14(1) , 1-19.

Murty DVPS, Manikandan K, Kumar WS, Ramesh RG, Purokayastha S, Nagendra B, Abhishek ML, Balakrishnan A, Javali M, Rao NP and Ray S , ( 2021 ), Stimulus-induced Gamma rhythms are weaker in human elderly with Mild Cognitive Impairment and Alzheimer’s Disease , Elife , 10 , e61666.

Dhawale A.K., Hagiwara A, Bhalla US, Murthy VN, Albeanu DF , ( 2010 ), Non-redundant odor coding by sister mitral cells revealed by light addressable glomeruli in the mouse , Nature Neuroscience , 13(11) , 1404-1412.

Kawai R., Markman T., Poddar R., Ko R., Fantana A.L., Dhawale A.K., Kampff A.R., Ölveczky B.P. , ( 2015 ), Motor cortex is required for learning but not for executing a motor skill , Neuron , 86(3) , 800-812.

Dhawale A.K., Smith M.A., Ölveczky B.P. , ( 2017 ), The role of variability in motor learning , Annual Review of Neuroscience , 40 , 479-498.

Dhawale A.K., Miyamoto Y.R., Smith M.A., Ölveczky B.P. , ( 2019 ), Adaptive regulation of motor variability , Current Biology , 29(21) , 3551–3562.

Williams A.H., Poole B., Mahaswaranathan N., Dhawale A.K., Fisher T., Wilson C.D., Brann D.H., Trautmann E., Ryu S., Shusterman R., Rinberg D., Ölveczky B.P., Shenoy K.V., Ganguli S. , ( 2020 ), Discovering precise temporal patterns in large-scale neural recordings through robust and interpretable time warping , Neuron , 105(2) , 246-259.

Dhawale A.K., Wolff S.B.E., Ko R., Ölveczky B.P., , ( 2021 ), The basal ganglia control the detailed kinematics of learned motor skills , Nature Neuroscience , 24 , 1256–1269.

Jana Sumitash, Gopal Atul PA. and A. Murthy , ( 2021 ), Computational mechanisms mediating inhibitory control of coordinated eye-hand movements , Brain Sciences , 11(5) , 607

Varsha V., Aditya Murthy, and Radhakant Padhi , ( 2021 ), A stochastic velocity tracking optimal control model with internal feedback for saccadic eye movements , Biomedical Signal Processing and Control , 68, , 102679

Garima Virmani, Priyal D’almeida, Arnab Nandi, Swananda Marathe , ( 2021 ), Subfield-specific Effects of Chronic Mild Unpredictable Stress on Hippocampal Astrocytes , European Journal of Neuroscience , April

A Barik, A Sathyamurthy, JH Thompson, M Seltzer, AJ Levine, AT Chesler , ( 2021 ), A spinoparabrachial circuit defined by Tacr1 expression drives pain , Elife , 10 , e61135.

Prakash SS, Das A, Kanth ST, Mayo JP, Ray S , ( 2021 ), Decoding of attentional state using high-frequency local field potential is as accurate as using spikes , Cerebral Cortex , 31(9) , 4314-4328

Das A and Ray S , ( 2021 ), Effect of cross-orientation normalization on different neural measures in macaque primary visual cortex , Cerebral Cortex Communications , 2(1) , tgab009.

Pratima Pandey©, Umer S. Bhat, Anuradha Singh, Aiswarya Joy, Varun Birari, Nagesh Y. Kadam and Kavita Babu© , ( 2021 ), Dauer formation in C. elegans is modulated through AWC and ASI dependent chemosensation , Eneuro , 8(2)

Jacob G, Pramod RT, Katti H & Arun SP , ( 2021 ), Qualitative similarities and differences in visual object representations between brains and deep networks , Nature Communications , 12(1) , 1-14.

Chen G, Padmala S, Chen Y, Taylor PA, Cox RW, and Pessoa L , ( 2021 ), To pool or not to pool: Can we ignore cross-trial variability in FMRI? , NeuroImage , 225 , 117496.

Limbachia C, Morrow K, Khibovska A, Meyer C, Padmala S, and Pessoa L , ( 2021 ), Controllability over stressor decreases responses in key threat-related brain areas , Communications Biology , 4(1) , 1-11.

Jana, Sumitash, and Aditya Murthy , ( 2021 ), Spatiotemporal coupling between eye and hand trajectories during curved hand movements , Journal of Motor Behavior , 53(1): , 47-58

Sendhilnathan N., Basu D., Goldberg M.E., Schall J.D. and Aditya Murthy , ( 2021 ), Neural correlates of goal-directed and non-goal-directed movements , Proceedings of the National Academy of Sciences , 118 , (6).

Pratima Pandey*©, Anuradha Singh*, Harjot Kaur, Anindya Ghosh-Roy and Kavita Babu© , ( 2021 ), Increased dopaminergic neurotransmission results in ethanol dependent sedative behaviors in Caenorhabditis elegans , PLoS Genetics , 17(2): , e1009346

Nagesh Kadam©, Sukanta Behera, Sandeep Kumar, Anindya Ghosh-Roy and Kavita Babu© , ( 2021 ), The G-protein coupled receptor SRX-97 is required for concentration dependent sensing of benzaldehyde in Caenorhabditis elegans , eNeuro , 8(01): , ENEURO.0011-20.2020.

KA Zhivago, LS Sneha, Ranjini Garani, Simran Purokayastha, Naren P Rao, Aditya Murthy, Arun SP , ( 2020 ), Perceptual priming can increase or decrease with ageing , Frontiers in Aging Neuroscience

Barik A, Lu Y, Sathyamurthy A, Bowman A, Shen C, Li L, Xiong WC, Mei L , ( 2014 ), LRP4 is critical for neuromuscular junction maintenance , J Neurosci , 34(42) , 13892-905.

Bean JC, Lin TW, Sathyamurthy A, Liu F, Yin DM, Xiong WC, Mei L , ( 2014 ), Genetic labeling reveals novel cellular targets of schizophrenia susceptibility gene: distribution of GABA and non-GABA ErbB4-positive cells in adult mouse brain , Journal of Neuroscience , 34(40) , 13549-13566.

Yin DM, Sun XD, Bean JC, Lin TW, Sathyamurthy A, Xiong WC, Gao TM, Chen YJ, Mei L , ( 2013 ), Regulation of spine formation by ErbB4 in PV-positive interneurons , Journal of Neuroscience , 33(49) , 19295-19303.

Yin DM, Chen YJ, Lu YS, Bean JC, Sathyamurthy A, Shen C, Liu X, Lin TW, Smith CA, Xiong WC, Mei L , ( 2013 ), Reversal of behavioral deficits and synaptic dysfunction in mice overexpressing neuregulin 1 , Neuron , 78(4) , 644-657.

Yin DM, Chen YJ, Sathyamurthy A, Xiong WC , ( 2012 ), Synaptic dysfunction in schizophrenia , Synaptic Plasticity , 493-516.

Wu H, Barik A, Lu Y, Shen C, Bowman A, Li L, Sathyamurthy A, Lin TW, Xiong WC, Mei L , ( 2015 ), Slit2 as a β-catenin/Ctnnb1-dependent retrograde signal for presynaptic differentiation , Elife , 4 , e07266.

Sathyamurthy A, Yin DM, Barik A, Shen C, Bean JC, Figueiredo D, She JX, Xiong WC, Mei L , ( 2015 ), ERBB3-mediated regulation of Bergmann glia proliferation in cerebellar lamination , Development , 142(3) , 522-532.

Yin DM, Chen YJ, Liu S, Jiao H, Shen C, Sathyamurthy A, Lin TW, Xiong WC, Li BM, Mei L, Bergson C , ( 2015 ), Calcyon stimulates neuregulin 1 maturation and signaling , Molecular psychiatry , 20 , 1251-1260.

Barik A, Li L, Sathyamurthy A, Xiong WC, Mei L , ( 2016 ), Schwann Cells in Neuromuscular Junction Formation and Maintenance , Journal of Neuroscience , 36(38) , 9770-81

Sun XD, Li L, Liu F, Huang ZH, Bean JC, Jiao HF, Barik A, Kim SM, Wu H, Shen C, Tian Y, Lin TW, Bates R, Sathyamurthy A, Chen YJ, Yin DM, Xiong L, Lin HP, Hu JX, Li BM, Gao TM, Xiong WC, Mei L , ( 2016 ), Lrp4 in astrocytes modulates glutamatergic transmission , Nature neuroscience , 19(8) , 1010-1018

Matson KJE, Sathyamurthy A, Johnson KR, Kelly MC, Kelley MW, Levine AJ , ( 2018 ), Isolation of adult spinal cord nuclei for massively parallel single-nucleus RNA sequencing , J Vis Exp , (140)

Sathyamurthy A*, Johnson KR*, Matson KJE, Dobrott CI, Li L, Ryba AR, Bergmann TB, Kelly MC, Kelley MW, Levine AJ , ( 2018 ), Massively Parallel Single Nucleus Transcriptional Profiling Defines Spinal Cord Neurons and Their Activity during Behavior , Cell Rep , 22(8): , 2216-2225 (* authors contributed equally).

Dobrott C, Sathyamurthy A, Levine AJ , ( 2019 ), Decoding cell type diversity within the spinal cord , Current Opinion in Physiology , 8 , 1-6

Zhang H, Sathyamurthy A, Liu F, Li L, Zhang L, Dong Z, Cui W, Sun X, Zhao K, Wang H, Ho HH, Xiong WC, Mei L , ( 2019 ), Agrin-Lrp4-Ror2 signaling regulates adult hippocampal neurogenesis in mice , Elife , 8 , e45303

Wu H, Lu Y, Barik A, Joseph A, Taketo MM, Xiong WC, Mei L , ( 2012 ), β-Catenin gain of function in muscles impairs neuromuscular junction formation , Development , 139(13) , 2392-2404.

Shen C, Lu Y, Zhang B, Figueiredo D, Bean J, Jung J, Wu H, Barik A, Yin DM, Xiong WC, Mei L , ( 2013 ), Antibodies against low-density lipoprotein receptor-related protein 4 induce myasthenia gravis , Journal of Clinical Investigation , 123(12) , 5190- 5202.

Barik A*, Lu Y*, Sathyamurthy A, Bowman A, Shen C, Xiong WC, Mei L, , ( 2014 ), LRP4 is critical for neuromuscular junction maintenance , Journal of Neuroscience , 34(42) , 13892-13905.

Sathyamurthy A, Yin D, Barik A, Shen C, Bean JC, Figueiredo D, She JX, Xiong WC, Mei L , ( 2015 ), ERBB3-mediated regulation of Bergmann glia proliferation in cerebellar amination , Development , 142(3) , 522-32.

Sun X-D, Li L, Huang Z-H, Bean J.C., Jiao H-F, Barik A, Kim S-M, Liu F, Wu H, Shen C, Tian Y, Lin T.W., Bates R, Sathyamurthy A, Chen Y-J, Yin D-M, Xiong L, Lin H-P, Hu J-X, Li B-M, Gao T-M, Xiong W-C, Mei L, , ( 2016 ), Lrp4 in astrocytes modulates glutamatergic transmission , Nature Neuroscience , 19 , 1010–1018.

Barik A*, Li L*, Sathyamurthy A, Figueredo D, Xiong WC, Mei L , ( 2016 ), Schwann cells in neuromuscular junction formation and maintenance , Journal of Neuroscience , 36(38) , 9770-9781.

Li L, Cao Yu, Wu H, Ye X, Shen C, Barik A, Xie X, Gan L, Xiong W-C, Mei L , ( 2016 ), Enzymatic Activity of the Scaffold Protein Rapsyn for Synapse Formation , Neuron , 92(5) , 1007-1019.

Ghitani N*, Barik A*, Szczot M*, Thompson J, Li C, Le Pichon C, Krashes M, Chesler A , ( 2017 ), Specialized mechanosensory nociceptors mediating rapid responses to hair pull , Neuron , 95 , 944-954.

Lin, T. W., Tan, Z., Barik, A., Yin, D. M., Brudvik, E., Wang, H., ... & Mei, L , ( 2018 ), Regulation of synapse development by Vgat deletion from ErbB4-positive interneurons , Journal of Neuroscience , 38(10) , 2533-2550.

Szczot, M., Liljencrantz, J., Ghitani, N., Barik, A., Lam, R., Thompson, J. H., ... & Foley, A. R , ( 2018 ), PIEZO2 mediates injury-induced tactile pain in mice and humans , Science translational medicine , 10(462).

Barik A, Thompson J, Seltzer M, Ghitani N, Chesler A , ( 2018 ), A brainstem-spinal circuit controlling nocifensive behavior , Neuron , 100(6) , 1491-1503.

Kozlitina J, Risso D, Lansu K, Olsen RHJ, Sainz E, Luiselli D, Barik A, Frigerio-Domingues C, Pagani L, Wooding S, Kirchner T, Niaura R, Roth B, Drayna D , ( 2019 ), An African-specific haplotype in MRGPRX4 is associated with menthol cigarette smoking , PLoS Genetics , 15(2) , e1007916

Solinski HR, Kriegbaum MC, Tseng PY, Earnest TW, Sainz E, Gu X, Barik A, Chesler AT, Hoon MA , ( 2019 ), Nppb Neurons Are Sensors of Mast Cell-Induced Itch , Cell Reports , 26(13) , 3561-3573.

Sathyamurthy A, Barik A, Dobrott CI, Matson KJE, Stoica S, Pursley R, Chesler A, Levine AJ , ( 2020 ), Direct Cerebellospinal Pathways Regulate Motor Performance and Motor Learning , Cell Reports , 31(6) , 107595

Mani S*, Radhakrishnan S, Cheramangalam RN, Shalini H, Rajendran S and Ramanan N* , ( 2020 ), Shh mediated increase in β-catenin levels maintains cerebellar granule neuron progenitors in proliferation , Cerebellum , 19 , 645–664.

Pramod RT & Arun SP , ( 2020 ), Improving Machine Vision using Human Perceptual Representations: The Case of Planar Reflection Symmetry for Object Classification , IEEE Transactions in Pattern Analysis and Machine Intelligence

Sendnilnathan N., Basu D. and A. Murthy. , ( 2020 ), Assessing within-trial and across-trial neural variability in macaque frontal eye fields and their relation to behavior , Eur. Journal of Neuroscience

Vikram Pal Singh, Aditya Singh and Balaji Jayaprakash. , ( 2019 ), Estimating the Limiting Speed of Acquisition in Next Generation In-vivo Imaging at Mesoscales , iScience Notes , 4,Article #4.

Kumar, M, Deshmukh, SS , ( 2020 ), Differential propagation of ripples along the proximodistal and septotemporal axes of dorsal CA1 of rats , Hippocampus , 30(9) , 970-986.

Agrawal A, Hari KVS & Arun SP , ( 2020 ), A compositional neural code in high-level visual cortex can explain jumbled word reading , eLife , 9:e54846

Dinavahi MVPS, Manikandan K, Kumar WS, Ramesh RG, Purokayastha S, Javali M, Rao NP, Ray S , ( 2020 ), Gamma oscillations weaken with age in healthy elderly in human EEG , Neuroimage , 215 , 116826

LCL. Portugal, RCS. Alves, .....,S. Padmala, G. Chen, L. Pessoa, and MG. Pereira , ( 2020 ), Interactions between emotion and action in the brain , NeuroImage , 214 , 116728.

Ray S†, Jouny CC, Crone NE, Boatman D, Thakor NV, Franaszczuk PJ , ( 2003 ), Human ECoG analysis during speech perception using matching pursuit: a comparison between stochastic and dyadic dictionaries , IEEE Transactions in Biomedical Engineering , 50(12) , 1371-1373

Muniak MA, Ray S, Hsiao SS, Dammann JF, Bensmaia SJ† , ( 2007 ), The neural coding of stimulus intensity: linking the population response of mechanoreceptive afferents with psychophysical behavior , Journal of Neuroscience , 27(43) , 11687-11699.

Ray S, Niebur E, Hsiao SS, Sinai A and Crone NE† , ( 2008 ), High-frequency gamma activity (80-150 Hz) is increased in human cortex during selective attention , Clinical Neurophysiology , 119(1) , 116-133.

Ray S†, Hsiao SS, Crone NE, Franaszczuk PJ and Niebur E , ( 2008 ), Effect of stimulus intensity on the spike-local field potential relationship in the secondary somatosensory cortex , Journal of Neuroscience , 28(29) , 7334-7343.

Ray S†, Crone NE, Niebur E, Franaszczuk PJ and Hsiao SS , ( 2008 ), Neural correlates of high-gamma oscillations (60-200 Hz) in macaque local field potentials and their potential implications in electrocorticography , Journal of Neuroscience , 28(45) , 11526-11536.

Salelkar S and Ray S , ( 2020 ), Interaction between steady-state visually evoked potentials at nearby flicker frequencies , Scientific Reports , 10 , 5344

Kanth ST and Ray S , ( 2020 ), Electrocorticogram (ECoG) is highly informative in primate visual cortex , Journal of Neuroscience , 40(12) , 2430-2444

Ajmera, S., Jain, H., Sundaresan, M. and Sridharan, D , ( 2020 ), Decoding task-specific cognitive states with slow, directed functional networks in the human brain , eNeuro , (in press)

*Ajmera, S., Rajagopal, S., Rehman, R. and Sridharan, D. , ( 2019 ), Infra-slow brain dynamics as a marker for cognitive function and decline , Advances in Neural Information Processing Systems , (pp. 6947-6958)

Ashwani Bhardwaj*, Pratima Pandey* and Kavita Babu , ( 2020 ), Control of locomotory behavior of Caenorhabditis elegans by the immunoglobulin superfamily protein RIG-3 , Genetics , 214(1): , 135-45

Basu Debaleena and A. Murthy , ( 2020 ), Parallel programming of saccades in the macaque frontal eye field: are sequential motor plans co-activated? , Journal of Neurophysiology , 123(1): , 107-119

Vina Tikiyani© and Kavita Babu© , ( 2019 ), Claudins in the brain: Unconventional functions in neurons , Traffic , 20(11): , 807-14

Agrawal A, Hari KVS & Arun SP , ( 2019 ), Reading Increases the Compositionality of Visual Word Representations , Psychological Science , 30: , 1707-1723

*Sreenivasan, V. and Sridharan, D. , ( 2019 ), Subcortical connectivity correlates selectively with attention’s effects on spatial choice bias , Proceedings of the National Academy of Sciences , 116(39) , 19711-19716

Yogesh Dahiya©, Saloni Rose, Shruti Thapliyal, Shivam Bhardwaj, Maruthi Prasad and Kavita Babu© , ( 2019 ), Differential regulation of innate and learned behavior by CREB1/CRH-1 in Caenorabditis elegans , The Journal of Neuroscience , 39(40): , 7934-46

Kavita Babu© and Sandhya P Koushika© , ( 2019 ), Sydney Brenner (1927-2019) , Current Science , 16(12): , 2106-09

Banerjee, S., Grover, S., Ganesh, S. and Sridharan, D*. , ( 2019 ), Sensory and decisional components of endogenous attention are dissociable , Journal of neurophysiology , 122(4) , 1538-1554

Zhitao Hu*, Edward C.G. Pym*, Kavita Babu*, Amy B. Vahlishan Murray*, and Joshua M. Kaplan , ( 2011 ), A neuropeptide-mediated stretch response links muscle contraction to changes in neurotransmitter release , Neuron 2011 , 71(1) , 92-102.

Kavita Babu, Zhitao Hu, Shih-Chieh Chien, Gian Garriga and Joshua M. Kaplan , ( 2011 ), The Immunoglobulin super family protein RIG-3 prevents synaptic potentiation and regulates Wnt signaling , Neuron , 71(1) , 103-116.

Pratima Pandey, Ashwani Bhardwaj and Kavita Babu , ( 2017 ), Regulation of WNT Signaling at the Neuromuscular Junction by the Immunoglobulin Super-Family Protein RIG-3 in Caenorhabditis elegans , Genetics , 206(3) , 1521-1534.

Shruti Thapliyal, Amruta Vasudevan*, Yongming Dong*, Jihong Bai, Sandhya P. Koushika and Kavita Babu , ( 2018 ), The C-terminal of CASY-1/Calsyntenin regulates GABAergic synaptic transmission at the Caenorhabditis elegans neuromuscular junction , PLoS Genetics , 14(3): , e1007236

Shruti Thapliyal, Shruthi Ravindranath and Kavita Babu , ( 2018 ), Regulation of glutamate signaling in the sensorimotor circuit by CASY-1A/Calsyntenin in Caenorhabditis elegans , Genetics , 208(4): , 1553-64

Ashwani Bhardwaj*, Saurabh Thapliyal*, Yogesh Dahiya and Kavita Babu , ( 2018 ), FLP-18 functions through the G-protein coupled receptors NPR-1 and NPR-4 to modulate reversal length in Caenorhabditis elegans , The Journal of Neuroscience , 38(20): , 4641-54

Pallavi Sharma*, Lei Li*, Haowen Liu, Vina Tikiyani, Zhitao Hu© and Kavita Babu© , ( 2018 ), The Claudin-like protein, HPO-30, is required to maintain LAChRs at the Caenorhabditis elegans neuromuscular junction , The Journal of Neuroscience , 38(32): , 7072-87

Shruti Thapliyal and Kavita Babu , ( 2018 ), Pentylenetetrazole (PTZ)-induced Convulsion Assay to Determine GABAergic Defects in Caenorhabditis elegans , Bio-protocol , 8(17): , e2989

Vina Tikiyani, Lei Li, Pallavi Sharma, Haowen Liu, Zhitao Hu and Kavita Babu , ( 2018 ), Wnt secretion is regulated by the tetraspan protein HIC-1 through its interaction with Neurabin/NAB-1 , Cell Reports , 25(7): , 1856-71

Raunaq Deo*, Manish S. Kushwah*, Sukrut C. Kamerkar, Nagesh Y. Kadam, Srishti Dar, Kavita Babu, Anand Srivastava and Thomas J. Pucadyil , ( 2018 ), ATP-dependent membrane remodeling links EHD1 functions to endocytic recycling , Nature Communications , 9(1): , 5187

Shruti Thapliyal© and Kavita Babu© , ( 2019 ), C. elegans Locomotion: Finding Balance in Imbalance , Advances in Experimental Medicine and Biology , 1112: , 185-96

Puneet Singh, Ketan Jhunjhunwala, Albert Stezin, Abhishek Lenka, Pramod Kumar Pal, Ashitava Ghosal, Aditya Murthy , ( 2019 ), Basal ganglia contributions during the learning of a visuomotor rotation: effect of dopamine, deep brain stimulation and reinforcement , European Journal of Neuroscience , 50(8): , 3349-3364

Sagar, V., Sengupta, R., & Sridharan, D*. , ( 2019 ), Exogenous attention facilitates performance through dissociable sensitivity and bias mechanisms , Scientific Reports , 9(1) , 1-13

Katti H, Peleen MV and Arun SP , ( 2019 ), Machine vision benefits from human contextual expectations , Scientific Reports , 9: , 2112

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Padmala S, Sambuco N and Pessoa L , ( 2019 ), Interactions between reward motivation and emotional processing , Progress in Brain Research , 247 , 1-21.

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S-L. Lim, S. Padmala and L. Pessoa , ( 2009 ), Segregating the significant from the mundane on a moment-to-moment basis via direct and indirect amygdala contributions , Proceedings of the National Academy of Sciences , 106(39) , 16841-16846.

S. Padmala and L. Pessoa , ( 2010 ), Interactions between cognition and motivation during response inhibition , Neuropsychologia , 48(2) , 558-565.

S. Padmala and L. Pessoa , ( 2010 ), Moment-to-moment fluctuations in fMRI amplitude and inter-region coupling are predictive of inhibitory performance , Cognitive, Affective, and Behavioral Neuroscience , 10(2) , 279-297.

S. Padmala, S-L. Lim and L. Pessoa , ( 2010 ), Pulvinar and affective significance: responses track moment-to-moment stimulus visibility , Frontiers in Human Neuroscience , 4 , 64.

S. Padmala and L. Pessoa , ( 2011 ), Reward reduces conflict by enhancing attentional control and biasing visual cortical processing , Journal of Cognitive Neuroscience , 23(11) , 3419-3432.

S. Padmala, A. Bauer and L. Pessoa , ( 2011 ), Negative emotion impairs conflict-driven executive control , Frontiers in Psychology , 2 , 192.

K. Hu, A. Bauer, S. Padmala and L. Pessoa , ( 2012 ), Threat of bodily harm has opposing effects on cognition , Emotion , 12(1) , 28-32.

J-M Choi, S. Padmala and L. Pessoa , ( 2012 ), Impact of state anxiety on the interaction between threat monitoring and cognition , Neuroimage , 59(2) , 1912-1923.

L. Pessoa, S. Padmala, A. Kenzer and A. Bauer , ( 2012 ), Interactions between cognition and emotion during response inhibition , Emotion , 12(1) , 192-197.

J. Kinnison, S. Padmala, J-M Choi and L. Pessoa , ( 2012 ), Network analysis reveals increased integration during emotional and motivational processing , The Journal of Neuroscience , 32(24) , 8361-8372.

K. Hu*, S. Padmala* and L. Pessoa , ( 2013 ), Interactions between reward and threat during visual processing , Neuropsychologia , 51(9) , 1763-1772.

J-M Choi*, S. Padmala*, P. Spechler and L. Pessoa , ( 2014 ), Pervasive competition between threat and reward in the brain , Social Cognitive and Affective Neuroscience , 9(6) , 737-750.

G. Bissonette, R. Gentry, S. Padmala, L. Pessoa and M. Roesch , ( 2014 ), Impact of appetitive and aversive outcomes on brain responses: linking the animal and human literatures , Frontiers in Systems Neuroscience , 8 , 24.

S. Padmala and L. Pessoa , ( 2014 ), Motivation versus aversive processing during perception , Emotion , 14(3) , 450-454.

B. McMenamin, S. Langeslag, M. Sirbu, S. Padmala and L. Pessoa , ( 2014 ), Network organization unfolds over time during periods of anxious anticipation , The Journal of Neuroscience , 34(34) , 11261-11273.

L-R Dougherty, S-L Blankenship, P-A Spechler, S. Padmala and L.Pesso , ( 2015 ), An fMRI Study of Cognitive Reappraisal in Children: Divergent Effects on Brain and Behavior , Journal of Psychopathology and Behavioral Assessment , 37 , 634-644.

J-M Choi*, S. Padmala* and L. Pessoa , ( 2015 ), Counteracting effect of threat on reward enhancements during working memory , Cognition and Emotion , 29 , 1517-1526.

Yokoyama T*, S. Padmala* and L. Pessoa , ( 2015 ), Reward learning and negative emotion during rapid attentional competition , Frontiers in Psychology , 6 , 269.

C. Sours, J. Kinnison, S. Padmala, R-P. Gullapalli and L. Pessoa , ( 2018 ), Altered segregation between task-positive and task-negative regions in mild traumatic brain injury , Brain Imaging and Behavior , 12(3) , 697-709.

S. Padmala, M. Sirbu and L. Pessoa , ( 2017 ), Potential reward reduces the adverse impact of negative distractor stimuli , Social Cognitive and Affective Neuroscience , 12 , 1402-1413.

S. Padmala*, N. Sambuco*, M. Codispoti and L. Pessoa. , ( 2018 ), Attentional capture by simultaneous pleasant and unpleasant emotional distractors , Emotion , 18(8) , 1189-1194.

C-T Meyer*, S. Padmala* and L. Pessoa , ( 2019 ), Dynamic threat processing , Journal of Cognitive Neuroscience , 31(4) , 522-542.

Dubey A and Ray S , ( 2019 ), Cortical electrocorticogram (ECoG) is a local signal , Journal of Neuroscience , 39(22) , 4299-4311

Prabaha Gangopadhyay and Jhilik Das , ( 2019 ), Do Primates and Deep Artificial Neural Networks Perform Object Categorization in a Similar Manner? , Journal of Neuroscience , 39(6): , 946-948;

Sharath Umesh,Shweta Pant,Srivani Padmaa, Sumitash Jana, Varsha Vasudevan, Aditya Murthy, Sundarrajan Asokan , ( 2019 ), A novel Fibre-Bragg grating system for eye tracking , Journal of Advanced Research , 16: , 24-34

Kumar, S., Sreenivasan. V., Talukdar, P., Pestilli, F., Sridharan, D*. , ( 2019 ), ReAl-LiFE: Accelerating the discovery of individualized brain connectomes on GPUs , In proceedings of the 33rd AAAI Conference on Artificial Intelligence , 33(1), , 630-638

Kundu, J. N., Srinivas, R., Babu, V. R., Sridharan, D*. , ( 2017 ), A biologically-inspired sparse, topographic recurrent neural network model for robust change detection , NIPS workshop on Cognitively Informed Artificial Intelligence (CIAI) , Oral spotlight presentation

Sundaresan, M., Nabeel, A., & Sridharan, D*. , ( 2017 ), Mapping distinct timescales of functional interactions among brain networks , In Advances in Neural Information Processing Systems , (pp. 4109-4118)

Sridharan, D*., Steinmetz, N. A., Moore, T., & Knudsen, E. I. , ( 2017 ), Does the superior colliculus control perceptual sensitivity or choice bias during attention? Evidence from a multialternative decision framework , Journal of Neuroscience , 37(3) , 480-511

Knudsen, E. I., Schwarz, J. S., Knudsen, P. F., & Sridharan, D*. , ( 2017 ), Space-Specific Deficits in Visual Orientation Discrimination Caused by Lesions in the Midbrain Stimulus Selection Network , Current Biology , 27(14) , 2053-2064

Sartorel E, Ünlü C, Jose M, Massoni-Laporte A, Meca J, Sibarita JB, McCusker D , ( 2018 ), Phosphatidylserine and GTPase activation control Cdc42 nanoclustering to counter dissipative diffusion , Molecular Biology of the Cell , 29(11) , 1299-1310

Ahmad F, Das D, Kommaddi RP, Diwakar L, Gowaikar R, Rupanagudi KV, Bennett DA, Ravindranath V , ( 2018 ), Isoform-specific hyperactivation of calpain-2 occurs presymptomatically at the synapse in Alzheimer’s disease mice and correlates with memory deficits in human subjects , Scientific Reports , 8: , 13119

Chatterjee A, Chinappa K, Ramanan N, Mani S , ( 2018 ), Centrosome inheritance does not regulate cell fate in granule neuron progenitors of the developing cerebellum , Cerebellum , 17 , 685-691.

Wang C, Chen X, Lee H, Deshmukh SS, Yoganarasimha D, Savelli F, and Knierim JJ , ( 2018 ), Egocentric coding of external items in the lateral entorhinal cortex , Science , 362(6417) , 945-949

Marathe S, D'almeida PL, Virmani G, Bathini P, Alberi L , ( 2018 ), Effects of Monoamines and Antidepressants on Astrocyte Physiology: Implications for Monoamine Hypothesis of Depression , Journal of Experimental Neuroscience , 23: , 1-7

Das A and Ray S , ( 2018 ), Effect of stimulus contrast and visual attention on spike-gamma phase relationship in macaque primary visual cortex , Frontiers in Computational Neuroscience , 12 , 66.

Saxena R, Barde W, and Deshmukh SS , ( 2018 ), Inexpensive, scalable camera system for tracking rats in large spaces , Journal of Neurophysiology , 120: , 2383–2395

Jana S. and Murthy A , ( 2018 ), Task context determines whether common or separate inhibitory signals underlie the control of eye-hand movements. , Journal of Neurophysiology , 120: , 1695-1711

Venkataratamani PV and Murthy A , ( 2018 ), Distinct mechanisms explain the control of reach speed planning: evidence from a race model framework , Journal of Neurophysiology , 120: , 1293-1306

Salelkar S, Somasekhar GM, and Ray S , ( 2018 ), Distinct frequency bands in the local field potential are differently tuned to stimulus drift rate , Journal of Neurophysiology , 120: , 681-692

Sharath Umesh, Shweta Pant, Srivani Padma Goggi, Sundarrajan Asokan, Sumitash Jana, Varsha Vasudevan and Murthy A. , ( 2018 ), Method and device for tracking eye movement of a subject , Indian Provisional Patent , 201841002316

Dinavahi MVPS*, Shirhatti V*, Ravishankar P* and Ray S , ( 2018 ), Large visual stimuli induce two distinct gamma oscillations in primate visual cortex , Journal of Neuroscience , 38 , 2730-44

Kommaddi RP, Das D, Karunakaran S, Nanguneri S, Bapat D, Ray A, Shaw E, Bennett DA, Nair D, Ravindranath V , ( 2018 ), Aβ mediates F-actin disassembly in dendritic spines leading to cognitive deficits in Alzheimer’s disease , J Neuroscience , 38 , 1085–1099.

Pramod RT & Arun SP , ( 2018 ), Symmetric objects become special in perception due to generic computations in neurons , Psychological Science , 29:95-109

Subhash Chandran KS, Seelamantula CS, and Ray S , ( 2018 ), Duration Analysis Using Matching Pursuit Algorithm Reveals Longer Bouts of Gamma Rhythm , Journal of Neurophysiology , 119(3) , 808-821

Biswas A and Ray S , ( 2017 ), Control of alpha rhythm (8-13 Hz) using neurofeedback , Journal of the Indian Institute of Science , 97:4 , 527-531

Venkataratamani PV, Gopal Atul PA, Murthy A. , ( 2018 ), An independent race model involving an abort and re-plan strategy explains reach redirecting movements during planning and execution , European Journal of Neuroscience , 47: , 460-478

Jana Sumitash, Gopal Atul PA. and Murthy A. , ( 2017 ), A Computational Framework for Understanding Eye–Hand Coordination , J. Indian Inst. Sci. , 97(4): , 543–554

Banerjee, S., Grover, S., & Sridharan, D*. , ( 2017 ), Unraveling Causal Mechanisms of Top-Down and Bottom-Up Visuospatial Attention with Non-invasive Brain Stimulation , Journal of the Indian Institute of Science , 97 (4) , 451-475

P Meenakshi and J Balaji , ( 2017 ), Neural Circuits of Memory Consolidation and Generalisation , Journal of the Indian Institute of Science , 97 , 487–495

Varsha V, Radhakant Padhi, Murthy A , ( 2017 ), A Stochastic Feedback Model to Simulate Saccadic Eye Movement Variability , IFAC-PapersOnLine , Volume 50, Issue 1, , 13521-13525

Singh A and J Balaji , ( 2017 ), Sensitive Estimation of Flavor Preferences in STFP Using Cumulative Time Profiles , Bio-protocol , Vol 7

Jain D, Jakhalekar IR, Deshmukh SS , ( 2017 ), Navigational strategies and their neural correlates , Journal of the Indian Institute of Science , 97 (4) , 511-525

Donlea JN, Ramanan N, Silverman N and Shaw PJ , ( 2014 ), Genetic rescue of functional senescence in synaptic and behavioral plasticity , Sleep , 37 , 1427-1437.

Ravindranath V, Dang HM, Goya RG, Mansour H, Nimgaonkar VL, Russell VA, Xin Y , ( 2015 ), Regional research priorities in brain and nervous system disorders , Nature , 527(7578) , S198-S206.

Ravindranath, V. and Strobel H.W. , ( 2013 ), Cytochrome P450-mediated metabolism in brain: functional roles and their implications , Expert Opin Drug Metab Toxicol , 9(5) , 551-558.

Saeed U, Karunakaran S, Meka DP, Koumar RC, Ramakrishnan S, Joshi SD, Nidadavolu P, Ravindranath V. , ( 2009 ), Redox activated MAP kinase death signaling cascade initiated by ASK1 is not activated in female mice following MPTP: novel mechanism of neuroprotection , Neurotox Res. , 16(2) , 116-126

Alcino J Silva, Yu Zhou, Thomas Rogerson, Justin Shobe, J Balaji , ( 2009 ), Molecular and cellular approaches to memory allocation in neural circuits , Science , 326(5951) , 391-395.

Yu Zhou, Jaejoon Won, Mikael Guzman Karlsson, Miou Zhou, Thomas Rogerson, Jayaprakash Balaji, Rachael Neve, Panayiota Poirazi, Alcino J Silva , ( 2009 ), CREB regulates excitability and the allocation of memory to subsets of neurons in the amygdala , Nature neuroscience , 12(11) , 1438-1443.

K.M. Sharika, Supriya Ray and Murthy A. , ( 2009 ), Attention for Action during Error Correction , Progress in Brain Research , 176 , 227-244.

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