Sarmistha Mahanty, Ptissam Bergam, Vivek Belapurkar, Litralson Eluvathingal, Nikita Gupta, Bruno Goud, Deepak Nair, Graça Raposo, Subba Rao Gangi Setty ,
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Biogenesis of specialized lysosomes in differentiated keratinocytes relies on close apposition with the Golgi apparatus
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Cell Death & Disease
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15 (7) ,
496
Varsha V, Radhakant P, Murthy A. ,
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Modeling kinematic variability reveals displacement and velocity-based dual control of saccadic eye movements
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Experimental Brain Research
Chinchani A.M., Paliwal S., Ganesh S., Chandrasekhar V., Yu B.M., Sridharan D. ,
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Tracking momentary fluctuations in human attention with a cognitive brain-machine interface
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Communications Biology
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5 ,
1346
Link: https://doi.org/10.1038/s42003-022-04231-w
Thumu S. C. R., Jain M., Soman S., Das S., Verma V., Nandi A., Gutmann D. H., Jayaprakash B., Nair D., Clement J. P., Marathe S., Ramanan S. ,
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2024 ),
SRF-deficient astrocytes provide neuroprotection in mouse models of excitotoxicity and neurodegeneration
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eLife
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13:e95577 ,
1-28
Chandrasekaran A. N., Vermani A., Gupta P., Steinmetz N., Moore T., Sridharan D. ,
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Dissociable components of attention exhibit distinct neuronal signatures in primate visual cortex
,
Science Advances
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10(5) ,
1-15 (Media coverage: Hindu | Times of India)
Das A, Nandi N and Ray S ,
(
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Alpha and SSVEP power outperforms Gamma power in capturing Attentional Modulation in Human EEG
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Cerebral Cortex
S Kedia, K Mandal, PR Netrakanti, M Jose, SS Sisodia, and D Nair ,
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Nanoscale organization of Nicastrin, the substrate receptor of the γ-secretase complex, as independent molecular domains
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Molecular Brain
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14(1)
Belapurkar V., Swamy M.H.S, Singh, N., Kedia S., Gangi Setty S.R., Jose M., Nair D. ,
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Real time heterogeneity of supramolecular assembly of Amyloid Precursor Protein is modulated by an endocytic risk factor PICALM.
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Cellular and Molecular Lifesciences
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80
Prannay Reddy, Jayesh Vasudeva, Devanshi Shah, Jagat Narayan Prajapati, Nikhila Harikumar, Arnab Barik. ,
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A Deep-Learning Driven Investigation of the Circuit Basis for Reflexive Hypersensitivity to Thermal Pain
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Neuroscience
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530 ,
158-172
Aggarwal S and Ray S ,
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Slope of the power spectral density flattens at low frequencies (<150 Hz) with healthy aging but also steepens at higher frequency (>200 Hz) in human electroencephalogram
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Cerebral Cortex Communications
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Vol 4(2) ,
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Krishnakumaran R and Ray S ,
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Temporal characteristics of gamma rhythm constrain properties of noise in an inhibition-stabilized network model
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Cerebral Cortex
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33 ,
10108-10121
Kumar WS and Ray S ,
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Healthy aging and cognitive impairment alter EEG functional connectivity in distinct frequency bands
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European Journal of Neuroscience
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58 ,
3432-49
Varsha V, Atul Gopal, Sumitash Jana, Radhakant Padhi, Aditya Murthy ,
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Velocity tracking control best explains the modulation of saccade kinematics during eye-hand coordination.
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Eur. J Neurosci.
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Function of FMRP domains in regulating distinct roles of neuronal protein synthesis
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Molecular Neurobiology
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59(12) ,
7370-7392
Haukedal, H.; Corsi, GI.; Gadekar, VP.;Doncheva, NT.; Kedia, S.; de Haan, N.; Chandrasekaran, A.;Jensen, P.; Schiønning, P.; Vallin, S.; Marlet, FR.; Poon, A.; Pires, C.; Agha, FK.; Wandall, HH.; Cirera, S.; Simonsen, AH.; Nielsen, TT.; Nielsen, JE.; Hyttel, P.; Muddashetty, R.; Aldana, B.; Gorodkin, J.; Nair, D.; Meyer, M.; Larsen, MR.; Freude, K. ,
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Golgi fragmentation – One of the earliest organelle phenotypes in Alzheimer’s disease neurons
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Frontiers in Neuroscience
,
17
Mangalwedhekar, M., Singh, N., Thakur, C.S., Seelamantula, C.S., Jose, M., Nair, D. ,
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Achieving nanoscale precision using Neuromorphic localization microscopy
,
Nature Nanotechnology
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18(4) ,
380-389
Kiran K. Kolathur*©, Pallavi Sharma*, Nagesh Y. Kadam, Navneet Shahi, Ane Nishitha, Kavita Babu© ,
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Pre-mRNA splicing function of the ubiquitin-like protein Hub1/UBL-5 in Caenorhabditis elegans
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FEBS Letters
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597(3) ,
448-457
Satya Rungta, Aditya Murthy. ,
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Context-specific early recruitment of small motor units in the shoulder muscle reflects a reach movement plan.
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J. Neurophysiology
Pattisapu S and Ray S ,
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Stimulus-induced narrow-band gamma oscillations in humans can be recorded using open-hardware low-cost EEG amplifier
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PLoS One
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18(1) ,
e0279881
Rajeev P., Singh N., Kechkar A., Butler C., Ramanan N., Sibarita J.B., Jose M., Nair D. ,
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Nanoscale Regulation of Ca2+ dependent phase transitions and real time dynamics of SAP97/hDLG
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Nature Communications
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Rajeev P., Singh N., Kechkar A., Butler C., Ramanan N., Sibarita J.B., Jose M., Nair D. ,
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Nanoscale regulation of Ca2+ dependent phase transitions and real-time dynamics of SAP97/hDLG.
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Nature Communications
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13(1)
Basu D., Sendhilnathan N. and Aditya Murthy ,
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Neck muscle activity reflects neural patterns of sequential saccade planning in head-restrained primates.
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Journal of Neurophysiology (accepted)
Shirhatti V, Ravishankar P and Ray S ,
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Gamma oscillations in primate primary visual cortex are severely attenuated by small stimulus discontinuities
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PLoS Biology
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20(6) ,
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Prakash SS, Mayo JP and Ray S ,
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Decoding of attentional state using local field potentials
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Current Opinion in Neurobiology
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76 ,
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Devanshi Piyush Shah and Arnab Barik ,
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The Spino-Parabrachial Pathway for Itch
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Front Neural Circuits
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v.16
Liza K and Ray S ,
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Local interactions between steady-state visually evoked potentials at nearby flickering frequencies
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Journal of Neuroscience
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42(19) ,
3965-74
Ray S ,
(
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Spike-Gamma phase relationship in visual cortex
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Annual Review of Vision Sciences
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8:1
Murty DVPS and Ray S ,
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Stimulus-induced robust narrow-band gamma oscillations in human EEG using cartesian gratings
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Bio-protocol
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12(7) ,
e4379
Krishnakumaran R, Raees M, Ray S ,
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Shape analysis of gamma rhythm supports a superlinear inhibitory regime in an inhibition-stabilized network
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PLoS Computational Biology
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18 ,
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Kumar WS, Manikandan K, Murty DVPS, Ramesh RG, Purokayastha S, Javali M, Rao NP and Ray S ,
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Stimulus-induced narrowband gamma oscillations are test-retest reliable in healthy elderly in human EEG
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Cerebral Cortex Communications
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3(1) ,
tgab066
Meenakshi Prabod Kumar et al ,
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Novel measures of Morris water maze performance that use vector field maps to assess accuracy, uncertainty, and intention of navigational searches
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Hippocampus Accepted
,
(2021)
Shridhar, S. et al ,
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A new paradigm for investigating temporal order memory shows higher order associations are present in recent but not in remote retrieval
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Distal CA1 Maintains a More Coherent Spatial Representation than Proximal CA1 When Local and Global Cues Conflict
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41 (47): 9767-9781
A G Ramakrishnan, ,
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Cardiorespiratory and endocrine mechanisms behind the effectiveness of pranayama
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Dynamic MR imaging using generalized series
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Improved kt-BLAST for fast fMRI imaging
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Composite MR image reconstruction and unaliasing for general trajectories using neural networks
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Low cost calibrated mechanical noisemaker for hearing screening of neonates in resource constrained settings
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DBscorer: an open source software for automated accurate analysis of rodent behavior in forced swim test and tail suspension test
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Kedia S., Mandal K., Netrakanti P.R., Jose M., Sisodia S.S., Nair D. ,
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Nanoscale organization of Nicastrin, the Substrate Receptor of the γ-Secretase Complex, as Independent Molecular Domains
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Neural mechanisms underlying the temporal control of sequential saccade planning in the frontal eye field.
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mEosBrite are bright variants of mEos3.2 developed by semirational protein engineering
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Differential scaling of synaptic molecules within functional zones of an excitatory synapse during homeostatic plasticity
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eNeuro
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Kedia, S., Ramakrishna, P., Netrakanti, P.R., Jose, M., Sibarita, J.-B., Nadkarni, S., and Nair, D. ,
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Real-time Nanoscale Organization of Amyloid Precursor Protein
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Nanoscale
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Koltun, B., Ironi, S., Gershoni-Emek, N., Barrera, I., Hleihil, M., Nanguneri, S., Sasmal, R., Agasti, S.S., Nair, D., and Rosenblum, K. ,
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Measuring mRNA translation in neuronal processes and somata by tRNA-FRET
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Nucleic Acids Research
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48(6) ,
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Venkatachalapathy, M., Belapurkar, V., Jose, M., Gautier, A., and Nair, D. ,
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Live cell super resolution imaging by radial fluctuations using fluorogen binding tags
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Nanoscale
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Nanguneri, S., Pramod, R., Efimova, N., Das, D., Jose, M., Svitkina, T., and Nair, D. ,
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Characterization of nanoscale organization of F-actin in morphologically distinct dendritic spines in vitro using supervised learning
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eNeuro
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6(4).
Kommaddi, R.P., Tomar, D.S., Karunakaran, S., Bapat, D., Nanguneri, S., Ray, A., Schneider, B.L., Nair, D., and Ravindranath, V. ,
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Glutaredoxin1 Diminishes Amyloid Beta-Mediated Oxidation of F-Actin and Reverses Cognitive Deficits in an Alzheimer’s Disease Mouse Model
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Antioxidants & Redox Signaling
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31(18) ,
1321-1338.
Kommaddi, R.P., Das, D., Karunakaran, S., Nanguneri, S., Bapat, D., Ray, A., Shaw, E., Bennett, D.A., Nair, D., and Ravindranath, V. ,
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Aβ mediates F-actin disassembly in dendritic spines leading to cognitive deficits in Alzheimer’s disease
,
Journal of Neuroscience
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38(5) ,
1085-1099.
Harper, C.B., Papadopulos, A., Martin, S., Matthews, D.R., Morgan, G.P., Nguyen, T.H., Wang, T., Nair, D., Choquet, D., and Meunier, F.A. ,
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Botulinum neurotoxin type-A enters a non-recycling pool of synaptic vesicles
,
Scientific reports
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6(1)
Jose, M., Tollis, S., Nair, D., Mitteau, R., Velours, C., Massoni-Laporte, A., Royou, A., Sibarita, J.-B., and McCusker, D. ,
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A quantitative imaging-based screen reveals the exocyst as a network hub connecting endocytosis and exocytosis
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Molecular biology of the cell
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26 ,
2519-2534.
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(
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Single-particle tracking uncovers dynamics of glutamate-induced retrograde transport of NF-κB p65 in living neurons
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Neurophotonics
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3(4)
Chazeau, A., Mehidi, A., Nair, D., Gautier, J.J., Leduc, C., Chamma, I., Kage, F., Kechkar, A., Thoumine, O., and Rottner, K. ,
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Nanoscale segregation of actin nucleation and elongation factors determines dendritic spine protrusion
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The EMBO journal
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33(23) ,
2745-2764.
Fraisier, V., Kasri, A., Miserey-Lenkei, S., Sibarita, J.-B., Nair, D., Mayeux, A., Bardin, S., Toyoda, Y., Poser, I., and Poznyakovskiy, A. ,
(
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C11ORF24 is a novel type I membrane protein that cycles between the Golgi apparatus and the plasma membrane in Rab6-positive vesicles
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PloS one
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8(12)
Nair, D., Hosy, E., Petersen, J.D., Constals, A., Giannone, G., Choquet, D., and Sibarita, J.-B. ,
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Super-resolution imaging reveals that AMPA receptors inside synapses are dynamically organized in nanodomains regulated by PSD95
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Journal of Neuroscience
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33(32) ,
13204-13224.
Kechkar, A., Nair, D., Heilemann, M., Choquet, D., and Sibarita, J.-B. ,
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Real-time analysis and visualization for single-molecule based super-resolution microscopy
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PLoS One
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8(4)
Jose, M., Tollis, S., Nair, D., Sibarita, J.-B., and McCusker, D. ,
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Robust polarity establishment occurs via an endocytosis-based cortical corralling mechanism
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Journal of Cell Biology
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200(4) ,
407- 418.
Rossier, O., Octeau, V., Sibarita, J.-B., Leduc, C., Tessier, B., Nair, D., Gatterdam, V., Destaing, O., Albiges-Rizo, C., and Tampé, R. ,
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Integrins β 1 and β 3 exhibit distinct dynamic nanoscale organizations inside focal adhesions
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Nature cell biology
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Hoze, N., Nair, D., Hosy, E., Sieben, C., Manley, S., Herrmann, A., Sibarita, J.-B., Choquet, D., and Holcman, D. ,
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Heterogeneity of AMPA receptor trafficking and molecular interactions revealed by superresolution analysis of live cell imaging
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Proceedings of the National Academy of Sciences
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109(42) ,
17052-17057.
Heidbreder, M., Zander, C., Malkusch, S., Widera, D., Kaltschmidt, B., Kaltschmidt, C., Nair, D., Choquet, D., Sibarita, J.-B., and Heilemann, M. ,
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TNF-α influences the lateral dynamics of TNF receptor I in living cells
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Biochimica et Biophysica Acta (BBA)-Molecular Cell Research
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1823(10) ,
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Izeddin, I., Boulanger, J., Racine, V., Specht, C.G., Kechkar, A., Nair, D., Triller, A., Choquet, D., Dahan, M., and Sibarita, J.B. ,
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Wavelet analysis for single molecule localization microscopy
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Opt Express
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20(3) ,
2081-2095.
Jose, M., Nair, D.K., Altrock, W.D., Dresbach, T., Gundelfinger, E.D., and Zuschratter, W. ,
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Investigating interactions mediated by the presynaptic protein bassoon in living cells by Foerster’s resonance energy transfer and fluorescence lifetime imaging microscopy
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Biophysical journal
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94(4) ,
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Jose, M., Nair, D.K., Reissner, C., Hartig, R., and Zuschratter, W. ,
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Photophysics of Clomeleon by FLIM: discriminating excited state reactions along neuronal development
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Biophysical journal
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FRET-FLIM at nanometer spectral resolution from living cells
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Optics express
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Lankipalli, S., Mahadeva Swamy, H.S., Selvam, D., Samanta, D., Nair, D.,Ramgopal, U. ,
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Cryptic association of B7-2 molecules and its implication for clustering
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Protein Science.
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Mandal,P., Belapurkar, V., Nair, D Ramanan, N. ,
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Vinculin-mediated axon growth requires interaction with actin but not talin in mouse neocortical neurons
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Cellular and Molecular Life Sciences online
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78 ,
5807-5826
Tanwar,M., Kateriya,S., Nair, D., Jose,M. ,
(
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Optogenetic modulation of real-time nanoscale dynamics of HCN channels using photoactivated adenylyl cyclases
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RSC Chemical Biology
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2(3) ,
863-875
Nair, D., Kedia, S., Jose,M. ,
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Does altered probability of real-time diffussional collissions of membrane molecules trigger or delay Alzheimer’s Disease
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5(3) ,
2020.
Kedia, S., Ramakrishna, P., Netrakanti, P.R., Singh, N., Sisodia, S.S., Jose, M., Sathish Kumar, Mahadevan, A., Ramanan, N., Nadkarni, S., and Nair, D. ,
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2021 ),
Alteration in synaptic nanoscale organization dictates amyloidogenic processing in Alzheimer’s disease
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iScience,
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24(3)
Jain M, Das S, Lu PPY, Virmani G, Soman S, Thumu SCR, Gutmann DH, Ramanan N ,
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SRF is required for maintenance of astrocytes in non-reactive state in the mammalian brain
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Eneuro
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8(1).
Sethi P, Virmani G, Gupta K, Thumu SCR, Ramanan N, Marathe S. ,
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Automated morphometric analysis with SMorph software reveals plasticity induced by antidepressant therapy in hippocampal astrocytes
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Journal of cell science
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134(12) ,
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Stimulus-induced Gamma rhythms are weaker in human elderly with Mild Cognitive Impairment and Alzheimer’s Disease
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Elife
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Motor cortex is required for learning but not for executing a motor skill
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Neuron
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Discovering precise temporal patterns in large-scale neural recordings through robust and interpretable time warping
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Neuron
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Garima Virmani, Priyal D’almeida, Arnab Nandi, Swananda Marathe ,
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Subfield-specific Effects of Chronic Mild Unpredictable Stress on Hippocampal Astrocytes
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European Journal of Neuroscience
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A spinoparabrachial circuit defined by Tacr1 expression drives pain
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Decoding of attentional state using high-frequency local field potential is as accurate as using spikes
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Cerebral Cortex
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Chen G, Padmala S, Chen Y, Taylor PA, Cox RW, and Pessoa L ,
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To pool or not to pool: Can we ignore cross-trial variability in FMRI?
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LRP4 is critical for neuromuscular junction maintenance
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Genetic labeling reveals novel cellular targets of schizophrenia susceptibility gene: distribution of GABA and non-GABA ErbB4-positive cells in adult mouse brain
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Regulation of spine formation by ErbB4 in PV-positive interneurons
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Slit2 as a β-catenin/Ctnnb1-dependent retrograde signal for presynaptic differentiation
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ERBB3-mediated regulation of Bergmann glia proliferation in cerebellar lamination
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Development
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Calcyon stimulates neuregulin 1 maturation and signaling
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Lrp4 in astrocytes modulates glutamatergic transmission
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Nature neuroscience
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Massively Parallel Single Nucleus Transcriptional Profiling Defines Spinal Cord Neurons and Their Activity during Behavior
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