Publications

2016

Krishnakumaran R, Pavuluri A, and Ray S† , ( 2024 ), Delayed accumulation of inhibitory input explains gamma frequency variation with changing contrast in an Inhibition Stabilized Network , Journal of Neuroscience

Prakash SS, Mayo JP and Ray S† , ( 2024 ), Dissociation of attentional state and behavioral outcome using local field potentials , eNeuro , eNeuro. 11(11): ENEURO.0327-24.2024

Divya Gulati and Supratim Ray , ( 2024 ), Auditory and Visual Gratings Elicit Distinct Gamma Responses , eNeuro , 11 (4)

Sidrat Tasawoor Kanth and Supratim Ray , ( 2024 ), Gamma Responses to Colored Natural Stimuli Can Be Predicted from Local Low-Level Stimulus Features , eNeuro , 11 (7)

Yuko Fukata, Masaki Fukata, Harold D MacGillavry, Deepak Nair, Eric Hosy , ( 2024 ), Celebrating the Birthday of AMPA Receptor Nanodomains: Illuminating the Nanoscale Organization of Excitatory Synapses with 10 Nanocandles , Journal of Neuroscience , 44 (23)

Sarmistha Mahanty, Ptissam Bergam, Vivek Belapurkar, Litralson Eluvathingal, Nikita Gupta, Bruno Goud, Deepak Nair, Graça Raposo, Subba Rao Gangi Setty , ( 2024 ), Biogenesis of specialized lysosomes in differentiated keratinocytes relies on close apposition with the Golgi apparatus , Cell Death & Disease , 15 (7) , 496

Ankita Sengupta, Sanjna Banerjee, Suhas Ganesh, Shrey Grover & Devarajan Sridharan , ( 2024 ), The right posterior parietal cortex mediates spatial reorienting of attentional choice bias , Nature Communications

Varsha V, Radhakant P, Murthy A. , ( 2024 ), Modeling kinematic variability reveals displacement and velocity-based dual control of saccadic eye movements , Experimental Brain Research

Sawant Y., Kundu J.N., Radhakrishnan V.B., Sridharan D. , ( 2022 ), A Midbrain Inspired Recurrent Neural Network Model for Robust Change Detection , Journal of Neuroscience , 42 (44) , 8262-8283

Link: https://doi.org/10.1523/JNEUROSCI.0164-22.2022

Chinchani A.M., Paliwal S., Ganesh S., Chandrasekhar V., Yu B.M., Sridharan D. , ( 2022 ), Tracking momentary fluctuations in human attention with a cognitive brain-machine interface , Communications Biology , 5 , 1346

Link: https://doi.org/10.1038/s42003-022-04231-w

Sreenivasan V., Kumar S., Pestilli F., Talukdar P., Sridharan D. , ( 2022 ), GPU-accelerated connectome discovery at scale , Nature Computational Science , 2 , 298-306

Link: https://doi.org/10.1038/s43588-022-00250-z

Chauhan K., Umapathi B.M., Shenoy P., Sridharan D. , ( 2022 ), Robust outlier detection by de-biasing VAE likelihoods , Computer Vision and Pattern Recognition (CVPR) , 9871-9880

Link: https://doi.ieeecomputersociety.org/10.1109/CVPR52688.2022.00965

Srivastava A., Shenoy p., Sridharan D. , ( 2023 ), Avoiding catastrophic referral failures In medical images under domain shift , ICLR Workshop on Domain Generalization (Oral Presentation)

Link: https://cns.iisc.ac.in/sridhar/assets/publications/anuj_avoiding_catastrophic_referral.pdf

Umapathi B.M., Chauhan K., Shenoy P., Sridharan D. , ( 2023 ), Shaken, and Stirred: Long-Range Dependencies Enable Robust Outlier Detection with PixelCNN++ , International Joint Conference on Artificial Intelligence (IJCAI) , 32 , 1440-1450

Link: https://doi.org/10.24963/ijcai.2023/160

Halder S., Raya D.V., Sridharan D. , ( 2024 ), Distinct neural bases of subcomponents of the attentional blink. eLife 13:RP97098 , eLife

Shah P.D.,Sharma R. P., Agarwal R., Barik A. , ( 2024 ), A septo-hypothalamic-medullary circuit directs stress-induced analgesia , eLife

Jaiswal S, Chakravarthula LN and Padmala S., , ( 2024 ), Additive effects of monetary loss and positive emotion in the human brain. , eNeuro. , 11(4)

Sivakumaran S, Chakravarthula LN and Padmala S., , ( 2024 ), Role of contingency in reward-emotion interactions during the categorization of emotional facial expressions. , Motivation Science.

Thumu S. C. R., Jain M., Soman S., Das S., Verma V., Nandi A., Gutmann D. H., Jayaprakash B., Nair D., Clement J. P., Marathe S., Ramanan S. , ( 2024 ), SRF-deficient astrocytes provide neuroprotection in mouse models of excitotoxicity and neurodegeneration , eLife , 13:e95577 , 1-28

Chandrasekaran A. N., Vermani A., Gupta P., Steinmetz N., Moore T., Sridharan D. , ( 2024 ), Dissociable components of attention exhibit distinct neuronal signatures in primate visual cortex , Science Advances , 10(5) , 1-15 (Media coverage: Hindu | Times of India)

Gupta P., Sridharan D. , ( 2024 ), Presaccadic attention does not facilitate the detection of changes in the visual field , PLOS Biology , 22(1) , 1-28

Das A, Nandi N and Ray S , ( 2024 ), Alpha and SSVEP power outperforms Gamma power in capturing Attentional Modulation in Human EEG. Cerebral Cortex , Cerebral Cortex , 34(1), bhad412

S Kedia, K Mandal, PR Netrakanti, M Jose, SS Sisodia, and D Nair , ( 2021 ), Nanoscale organization of Nicastrin, the substrate receptor of the γ-secretase complex, as independent molecular domains , Molecular Brain , 14(1)

Venkatesan, S., and Nair, D. , ( 2020 ), New Immunostaining Analysis Reveals Spatial and Molecular Variability in Synaptic Scaling , Neuroonline

Belapurkar V., Swamy M.H.S, Singh, N., Kedia S., Gangi Setty S.R., Jose M., Nair D. , ( 2023 ), Real time heterogeneity of supramolecular assembly of Amyloid Precursor Protein is modulated by an endocytic risk factor PICALM. , Cellular and Molecular Lifesciences , 80

Chakravarthula LN and Padmala S , ( 2023 ), Negative emotion reduces the discriminability of reward outcomes in the ventromedial prefrontal cortex , Social Cognitive and Affective Neuroscience , 18(1) , 01-10

Prannay Reddy, Jayesh Vasudeva, Devanshi Shah, Jagat Narayan Prajapati, Nikhila Harikumar, Arnab Barik. , ( 2023 ), A Deep-Learning Driven Investigation of the Circuit Basis for Reflexive Hypersensitivity to Thermal Pain , Neuroscience , 530 , 158-172

Jensen K.T., Kadmon Harpaz N., Dhawale A.K., Wolff S.B.E., Ölveczky B.P. , ( 2022 ), Long-term stability of single neuron activity in the motor system , Nature Neuroscience , 25 , 1664–1674.

Aggarwal S and Ray S , ( 2023 ), Slope of the power spectral density flattens at low frequencies (<150 Hz) with healthy aging but also steepens at higher frequency (>200 Hz) in human electroencephalogram , Cerebral Cortex Communications , Vol 4(2) , tgad011

Krishnakumaran R and Ray S , ( 2023 ), Temporal characteristics of gamma rhythm constrain properties of noise in an inhibition-stabilized network model , Cerebral Cortex , 33 , 10108-10121

Kumar WS and Ray S , ( 2023 ), Healthy aging and cognitive impairment alter EEG functional connectivity in distinct frequency bands , European Journal of Neuroscience , 58 , 3432-49

Pramod R.T., Katti H and Arun S.P , ( 2022 ), Human peripheral blur is optimal for object recognition , Vision Research , 200 , : 108083

(pdf | lay summary on Twitter)

Arun S.P , ( 2022 ), Using compositionality to understand parts in whole objects , European Journal of Neuroscience , Trailblazers in Neuroscience series, in press

(pdf | lay summary on Twitter)

Passi A and Arun S.P , ( 2022 ), The Bouba–Kiki effect is predicted by sound properties but not speech properties , Attention Perception and Psychophysics , in press

(pdf | lay summary on Twitter)

Varsha V, Atul Gopal, Sumitash Jana, Radhakant Padhi, Aditya Murthy , ( 2023 ), Velocity tracking control best explains the modulation of saccade kinematics during eye-hand coordination. , Eur. J Neurosci.

D’Souza, N., Ramakrishna, S., Radhakrishna, .K., Jhaveri, V., Ravindran, S., Yeramala, L., Nair, D.,Palakodeti, D., Muddashetty, R.S , ( 2022 ), Function of FMRP domains in regulating distinct roles of neuronal protein synthesis , Molecular Neurobiology , 59(12) , 7370-7392

Haukedal, H.; Corsi, GI.; Gadekar, VP.;Doncheva, NT.; Kedia, S.; de Haan, N.; Chandrasekaran, A.;Jensen, P.; Schiønning, P.; Vallin, S.; Marlet, FR.; Poon, A.; Pires, C.; Agha, FK.; Wandall, HH.; Cirera, S.; Simonsen, AH.; Nielsen, TT.; Nielsen, JE.; Hyttel, P.; Muddashetty, R.; Aldana, B.; Gorodkin, J.; Nair, D.; Meyer, M.; Larsen, MR.; Freude, K. , ( 2023 ), Golgi fragmentation – One of the earliest organelle phenotypes in Alzheimer’s disease neurons , Frontiers in Neuroscience , 17

Mangalwedhekar, M., Singh, N., Thakur, C.S., Seelamantula, C.S., Jose, M., Nair, D. , ( 2023 ), Achieving nanoscale precision using Neuromorphic localization microscopy , Nature Nanotechnology , 18(4) , 380-389

( 2022 ), Perceptions on preprints, peer review and publication charges , Current Science , 123(10) , 1187 (Editorial)

Kiran K. Kolathur*©, Pallavi Sharma*, Nagesh Y. Kadam, Navneet Shahi, Ane Nishitha, Kavita Babu© , ( 2023 ), Pre-mRNA splicing function of the ubiquitin-like protein Hub1/UBL-5 in Caenorhabditis elegans , FEBS Letters , 597(3) , 448-457

Pratima Pandey©, Gazaldeep Kaur and Kavita Babu© , ( 2022 ), Crosstalk between neurons and glia through G-protein coupled receptors: Insights from Caenorhabditis elegans , Progress in Molecular Biology and Translational Science , 193(1) , 119-144

Vandita S. Bhat©, Jagannath Jayaraj and Kavita Babu© , ( 2022 ), RNA and neuronal function: the importance of post-transcriptional regulation , Oxford Open Neuroscience , Vol 1

Satya Rungta, Aditya Murthy. , ( 2023 ), Context-specific early recruitment of small motor units in the shoulder muscle reflects a reach movement plan. , J. Neurophysiology

Pattisapu S and Ray S , ( 2023 ), Stimulus-induced narrow-band gamma oscillations in humans can be recorded using open-hardware low-cost EEG amplifier , PLoS One , 18(1) , e0279881

Rajeev P., Singh N., Kechkar A., Butler C., Ramanan N., Sibarita J.B., Jose M., Nair D. , ( 2022 ), Nanoscale Regulation of Ca2+ dependent phase transitions and real time dynamics of SAP97/hDLG , Nature Communications , 13(1): 4236.

Chakravarthula LN and Padmala S. , ( 2022 ), Arousal-driven interactions between reward motivation and categorization of emotional facial expressions , Frontiers in Psychology (Emotion Science)

SG Dastidar, D Nair , ( 2022 ), A Ribosomal Perspective on Neuronal Local Protein Synthesis , Frontiers in Molecular Neuroscience , 18

AP Kumar, N Singh, D Nair, A Justin , ( 2022 ), Neuronal PET tracers for Alzheimer’s disease , Biochemical and Biophysical Research Communications , 587 , 58-62

Rajeev P., Singh N., Kechkar A., Butler C., Ramanan N., Sibarita J.B., Jose M., Nair D. , ( 2022 ), Nanoscale regulation of Ca2+ dependent phase transitions and real-time dynamics of SAP97/hDLG. , Nature Communications , 13(1)

Basu D., Sendhilnathan N. and Aditya Murthy , ( 2022 ), Neck muscle activity reflects neural patterns of sequential saccade planning in head-restrained primates. , Journal of Neurophysiology (accepted)

Shirhatti V, Ravishankar P and Ray S , ( 2022 ), Gamma oscillations in primate primary visual cortex are severely attenuated by small stimulus discontinuities , PLoS Biology , 20(6) , e3001666

Prakash SS, Mayo JP and Ray S , ( 2022 ), Decoding of attentional state using local field potentials , Current Opinion in Neurobiology , 76 , 102589

Katti H & Arun SP , ( 2022 ), A separable neural code in monkey IT enables perfect CAPTCHA decoding , Journal of Neurophysiology , 127: 869-884 , (lay summary on Twitter)

Agrawal A, Nag S, Hari KVS & Arun SP , ( 2022 ), Letter processing in upright bigrams predicts reading fluency variations in children , Journal of Experimental Psychology , General, in press , (lay summary on Twitter)

Pramod RT & Arun SP , ( 2022 ), Improving Machine Vision using Human Perceptual Representations: The Case of Planar Reflection Symmetry for Object Classification , IEEE Transactions in Pattern Analysis and Machine Intelligence , 44: 228-241 , (India Alliance lay summary)

Somraj N, Kashi MS, Arun SP, Soundararajan R , ( 2022 ), Understanding the perceived quality of video predictions , Signal Processing , Image Communication , 102:116626

Devanshi Piyush Shah and Arnab Barik , ( 2022 ), The Spino-Parabrachial Pathway for Itch , Front Neural Circuits , v.16

Liza K and Ray S , ( 2022 ), Local interactions between steady-state visually evoked potentials at nearby flickering frequencies , Journal of Neuroscience , 42(19) , 3965-74

Ray S , ( 2022 ), Spike-Gamma phase relationship in visual cortex , Annual Review of Vision Sciences , 8:1

Umer S. Bhat*, Navneet Shahi*, Siju Surendran* and Kavita Babu  , ( 2021 ), Neuropeptides and Behaviors: How Small Peptides Regulate Nervous System Function and Behavioral Outputs , Frontiers in Molecular Neuroscience , 14 , 786471

Anuradha Singh, Kavita Babu© and Pratima Pandey© , ( 2021 ), Ethanol Induced Sedative Behavior: An assay to investigate increased dopamine signaling in C. elegans , Bio-protocol , 11(13) , e4083

Murty DVPS and Ray S , ( 2022 ), Stimulus-induced robust narrow-band gamma oscillations in human EEG using cartesian gratings , Bio-protocol , 12(7) , e4379

Krishnakumaran R, Raees M, Ray S , ( 2022 ), Shape analysis of gamma rhythm supports a superlinear inhibitory regime in an inhibition-stabilized network , PLoS Computational Biology , 18 , e1009886

Kumar WS, Manikandan K, Murty DVPS, Ramesh RG, Purokayastha S, Javali M, Rao NP and Ray S , ( 2022 ), Stimulus-induced narrowband gamma oscillations are test-retest reliable in healthy elderly in human EEG , Cerebral Cortex Communications , 3(1) , tgab066

Meenakshi Prabod Kumar et al , ( 2022 ), Novel measures of Morris water maze performance that use vector field maps to assess accuracy, uncertainty, and intention of navigational searches , Hippocampus Accepted , (2021)

Shridhar, S. et al , ( 2022 ), A new paradigm for investigating temporal order memory shows higher order associations are present in recent but not in remote retrieval , Exp. Brain Res. 2021 1 , 1–19 (2022)

Deshmukh SS. 2021 , ( 2021 ), Distal CA1 Maintains a More Coherent Spatial Representation than Proximal CA1 When Local and Global Cues Conflict , Journal of Neuroscience , 41 (47): 9767-9781

Jacob G, Katti H, Cherian T, Das J, Zhivago KA & Arun SP , ( 2021 ), A naturalistic environment to study visual cognition in unrestrained monkeys , eLife , 10: e63816 , (lay summary on Twitter)

A G Ramakrishnan, , ( 2020 ), Cardiorespiratory and endocrine mechanisms behind the effectiveness of pranayama , in the book “Evidence-based Perspectives on the Psychophysiology of Yoga and Its Applications,” published by IGI Global, edited by Dr. Shirley Telles.

Neelam Sinha, Manojkumar Saranathan and A. G. Ramakrishnan , ( 2010 ), Dynamic MR imaging using generalized series , International Journal of Magnetic Resonance Imaging , 2(1) , 3-21.

Neelam Sinha, Manojkumar Saranathan and A. G. Ramakrishnan , ( 2010 ), Improved kt-BLAST for fast fMRI imaging , Journal of Magnetic Resonance, , 204 , 273-280

Neelam Sinha, A. G. Ramakrishnan and Manojkumar Saranathan, , ( 2010 ), Composite MR image reconstruction and unaliasing for general trajectories using neural networks , Magnetic resonance imaging , 28(10) , 1468-1484.

A Ramesh, C Jagdish, M Nagapoorinima, PN Suman Rao, AG Ramakrishnan, GC Thomas, M Dominic, A Swarnarekha, , ( 2012 ), Low cost calibrated mechanical noisemaker for hearing screening of neonates in resource constrained settings , The Indian journal of medical research , 135(2), , 170.

A. G. Ramakrishnan, A.P. Prathosh and T. V. Ananthapadmanabha, , ( 2014 ), Threshold-independent QRS detection using the dynamic plosion index , IEEE Signal Processing Letters , 21(5), , 554-558.

TP Jerrin, AG Ramakrishnan, , ( 2021 ), Decoding Imagined Speech from EEG using Transfer Learning , IEEE Access

Jain Ritika, Angarai Ganesan Ramakrishnan, , ( 2021 ), Reliable sleep staging of unseen subjects with fusion of multiple EEG features and RUSBoost , Biomedical Signal Processing and Control, , Vol. 70

Amit Meghanani, Anoop C S, and A G Ramakrishnan, , ( 2021 ), Recognition of Alzheimer’s dementia from the transcriptions of spontaneous speech using fastText and CNN models , Frontiers in Computer Science, DOI: 10.3389/fcomp.2021.624558.

A. G. Ramakrishnan and J. V. Satyanarayana, , ( 2016 ), Reconstruction of EEG from limited channel acquisition using estimated signal correlation , Biomedical Signal processing & Control , 27 , 164–173, doi:10.1016/j.bspc.2016.02.004.

Arnab Nandi, Garima Virmani, Aatmika Barve, Swananda Marathe , ( 2021 ), DBscorer: an open source software for automated accurate analysis of rodent behavior in forced swim test and tail suspension test , eNeuro (accepted).

Jose M.*, Sivanand A., Channakeshava C. , ( 2021 ), Cholesterol is a critical determinant for hippocampal neuronal polarity , Frontiers in Molecular Neuroscience , 14

Kedia S., Mandal K., Netrakanti P.R., Jose M., Sisodia S.S., Nair D. , ( 2021 ), Nanoscale organization of Nicastrin, the Substrate Receptor of the γ-Secretase Complex, as Independent Molecular Domains , Molecular Brain , 14(1):158

Akshay Jagatap, Hritik Jain, Simran Purokayastha, Devarajan Sridharan , ( 2021 ), Neurally-constrained modeling of human gaze strategies in a change blindness task , PLoS Computational Biology , (In press)

Basu D., Sendhilnathan N., Murthy A. , ( 2021 ), Neural mechanisms underlying the temporal control of sequential saccade planning in the frontal eye field. , Proc Natl Acad Sci U S A. , (accepted)

Kedia, S., and Nair, D. , ( 2020 ), Nanoscale rearrangement of APP organization as a therapeutic target for Alzheimer’s disease , Medical Hypotheses , 143

Marathe, P., Mahadeva Swamy, H.S., Nair, D, Bhattacharya, D. , ( 2020 ), mEosBrite are bright variants of mEos3.2 developed by semirational protein engineering , Journal of Fluorescence , 30(3) , 703–715.

Venkatesan, S., Subramaniam, S., Rajeev, P., Chopra, Y., Jose, M., and Nair, D. , ( 2020 ), Differential scaling of synaptic molecules within functional zones of an excitatory synapse during homeostatic plasticity , eNeuro , 7(2).

Kedia, S., Ramakrishna, P., Netrakanti, P.R., Jose, M., Sibarita, J.-B., Nadkarni, S., and Nair, D. , ( 2020 ), Real-time Nanoscale Organization of Amyloid Precursor Protein , Nanoscale , 12(15) , 8200-8215.

Koltun, B., Ironi, S., Gershoni-Emek, N., Barrera, I., Hleihil, M., Nanguneri, S., Sasmal, R., Agasti, S.S., Nair, D., and Rosenblum, K. , ( 2020 ), Measuring mRNA translation in neuronal processes and somata by tRNA-FRET , Nucleic Acids Research , 48(6) , e32

Venkatachalapathy, M., Belapurkar, V., Jose, M., Gautier, A., and Nair, D. , ( 2019 ), Live cell super resolution imaging by radial fluctuations using fluorogen binding tags , Nanoscale , 11(8) , 3626-3632.

Nanguneri, S., Pramod, R., Efimova, N., Das, D., Jose, M., Svitkina, T., and Nair, D. , ( 2019 ), Characterization of nanoscale organization of F-actin in morphologically distinct dendritic spines in vitro using supervised learning , eNeuro , 6(4).

Kommaddi, R.P., Tomar, D.S., Karunakaran, S., Bapat, D., Nanguneri, S., Ray, A., Schneider, B.L., Nair, D., and Ravindranath, V. , ( 2019 ), Glutaredoxin1 Diminishes Amyloid Beta-Mediated Oxidation of F-Actin and Reverses Cognitive Deficits in an Alzheimer’s Disease Mouse Model , Antioxidants & Redox Signaling , 31(18) , 1321-1338.

Kommaddi, R.P., Das, D., Karunakaran, S., Nanguneri, S., Bapat, D., Ray, A., Shaw, E., Bennett, D.A., Nair, D., and Ravindranath, V. , ( 2018 ), Aβ mediates F-actin disassembly in dendritic spines leading to cognitive deficits in Alzheimer’s disease , Journal of Neuroscience , 38(5) , 1085-1099.

Harper, C.B., Papadopulos, A., Martin, S., Matthews, D.R., Morgan, G.P., Nguyen, T.H., Wang, T., Nair, D., Choquet, D., and Meunier, F.A. , ( 2016 ), Botulinum neurotoxin type-A enters a non-recycling pool of synaptic vesicles , Scientific reports , 6(1)

Jose, M., Tollis, S., Nair, D., Mitteau, R., Velours, C., Massoni-Laporte, A., Royou, A., Sibarita, J.-B., and McCusker, D. , ( 2015 ), A quantitative imaging-based screen reveals the exocyst as a network hub connecting endocytosis and exocytosis , Molecular biology of the cell , 26 , 2519-2534.

Widera, D., Klenke, C., Nair, D., Heidbreder, M., Malkusch, S., Sibarita, J.-B., Choquet, D., Kaltschmidt, B., Heilemann, M., and Kaltschmidt, C. , ( 2016 ), Single-particle tracking uncovers dynamics of glutamate-induced retrograde transport of NF-κB p65 in living neurons , Neurophotonics , 3(4)

Chazeau, A., Mehidi, A., Nair, D., Gautier, J.J., Leduc, C., Chamma, I., Kage, F., Kechkar, A., Thoumine, O., and Rottner, K. , ( 2014 ), Nanoscale segregation of actin nucleation and elongation factors determines dendritic spine protrusion , The EMBO journal , 33(23) , 2745-2764.

Fraisier, V., Kasri, A., Miserey-Lenkei, S., Sibarita, J.-B., Nair, D., Mayeux, A., Bardin, S., Toyoda, Y., Poser, I., and Poznyakovskiy, A. , ( 2013 ), C11ORF24 is a novel type I membrane protein that cycles between the Golgi apparatus and the plasma membrane in Rab6-positive vesicles , PloS one , 8(12)

Nair, D., Hosy, E., Petersen, J.D., Constals, A., Giannone, G., Choquet, D., and Sibarita, J.-B. , ( 2013 ), Super-resolution imaging reveals that AMPA receptors inside synapses are dynamically organized in nanodomains regulated by PSD95 , Journal of Neuroscience , 33(32) , 13204-13224.

Kechkar, A., Nair, D., Heilemann, M., Choquet, D., and Sibarita, J.-B. , ( 2013 ), Real-time analysis and visualization for single-molecule based super-resolution microscopy , PLoS One , 8(4)

Jose, M., Tollis, S., Nair, D., Sibarita, J.-B., and McCusker, D. , ( 2013 ), Robust polarity establishment occurs via an endocytosis-based cortical corralling mechanism , Journal of Cell Biology , 200(4) , 407- 418.

Rossier, O., Octeau, V., Sibarita, J.-B., Leduc, C., Tessier, B., Nair, D., Gatterdam, V., Destaing, O., Albiges-Rizo, C., and Tampé, R. , ( 2012 ), Integrins β 1 and β 3 exhibit distinct dynamic nanoscale organizations inside focal adhesions , Nature cell biology , 14(10) , 1057-1067.

Hoze, N., Nair, D., Hosy, E., Sieben, C., Manley, S., Herrmann, A., Sibarita, J.-B., Choquet, D., and Holcman, D. , ( 2012 ), Heterogeneity of AMPA receptor trafficking and molecular interactions revealed by superresolution analysis of live cell imaging , Proceedings of the National Academy of Sciences , 109(42) , 17052-17057.

Heidbreder, M., Zander, C., Malkusch, S., Widera, D., Kaltschmidt, B., Kaltschmidt, C., Nair, D., Choquet, D., Sibarita, J.-B., and Heilemann, M. , ( 2012 ), TNF-α influences the lateral dynamics of TNF receptor I in living cells , Biochimica et Biophysica Acta (BBA)-Molecular Cell Research , 1823(10) , 1984-1989.

Izeddin, I., Boulanger, J., Racine, V., Specht, C.G., Kechkar, A., Nair, D., Triller, A., Choquet, D., Dahan, M., and Sibarita, J.B. , ( 2012 ), Wavelet analysis for single molecule localization microscopy , Opt Express , 20(3) , 2081-2095.

Jose, M., Nair, D.K., Altrock, W.D., Dresbach, T., Gundelfinger, E.D., and Zuschratter, W. , ( 2008 ), Investigating interactions mediated by the presynaptic protein bassoon in living cells by Foerster’s resonance energy transfer and fluorescence lifetime imaging microscopy , Biophysical journal , 94(4) , 1483-1496.

Jose, M., Nair, D.K., Reissner, C., Hartig, R., and Zuschratter, W. , ( 2007 ), Photophysics of Clomeleon by FLIM: discriminating excited state reactions along neuronal development , Biophysical journal , 92(6) , 2237-2254.

Nair, D.K., Jose, M., Kuner, T., Zuschratter, W., and Hartig, R. , ( 2006 ), FRET-FLIM at nanometer spectral resolution from living cells , Optics express , 14(25) , 12217-12229.

Kedia, S., Ramanan, N., Nair, D. , ( 2021 ), Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons , STAR protocols , 2 (2)

Lankipalli, S., Mahadeva Swamy, H.S., Selvam, D., Samanta, D., Nair, D.,Ramgopal, U. , ( 2021 ), Cryptic association of B7-2 molecules and its implication for clustering , Protein Science. , 30(9) , 1958-1973

Mandal,P., Belapurkar, V., Nair, D Ramanan, N. , ( 2021 ), Vinculin-mediated axon growth requires interaction with actin but not talin in mouse neocortical neurons , Cellular and Molecular Life Sciences online , 78 , 5807-5826

Tanwar,M., Kateriya,S., Nair, D., Jose,M. , ( 2021 ), Optogenetic modulation of real-time nanoscale dynamics of HCN channels using photoactivated adenylyl cyclases , RSC Chemical Biology , 2(3) , 863-875

Nair, D., Kedia, S., Jose,M. , ( 2021 ), Does altered probability of real-time diffussional collissions of membrane molecules trigger or delay Alzheimer’s Disease , iScience Notes , 5(3) , 2020.

Kedia, S., Ramakrishna, P., Netrakanti, P.R., Singh, N., Sisodia, S.S., Jose, M., Sathish Kumar, Mahadevan, A., Ramanan, N., Nadkarni, S., and Nair, D. , ( 2021 ), Alteration in synaptic nanoscale organization dictates amyloidogenic processing in Alzheimer’s disease , iScience, , 24(3)

Rungta S.P., Basu D., Sendhilnathan N. and Aditya Murthy. , ( 2021 ), Preparatory activity links frontal eye field activity with small amplitude motor unit recruitment of neck muscles during gaze planning , J. Neurophysiology

Jain M, Das S, Lu PPY, Virmani G, Soman S, Thumu SCR, Gutmann DH, Ramanan N , ( 2021 ), SRF is required for maintenance of astrocytes in non-reactive state in the mammalian brain , Eneuro , 8(1).

Sethi P, Virmani G, Gupta K, Thumu SCR, Ramanan N, Marathe S. , ( 2021 ), Automated morphometric analysis with SMorph software reveals plasticity induced by antidepressant therapy in hippocampal astrocytes , Journal of cell science , 134(12) , jcs258430

Meenakshi Prabod Kumar; Suraj Kumar; Balaji Jayaprakash , ( 2021 ), In vivo Imaging of Immediate Early Gene expression dynamics segregates neuronal ensemble of memories of dual events , Molecular Brain , 14(1) , 1-19.

Murty DVPS, Manikandan K, Kumar WS, Ramesh RG, Purokayastha S, Nagendra B, Abhishek ML, Balakrishnan A, Javali M, Rao NP and Ray S , ( 2021 ), Stimulus-induced Gamma rhythms are weaker in human elderly with Mild Cognitive Impairment and Alzheimer’s Disease , Elife , 10 , e61666.

Dhawale A.K., Hagiwara A, Bhalla US, Murthy VN, Albeanu DF , ( 2010 ), Non-redundant odor coding by sister mitral cells revealed by light addressable glomeruli in the mouse , Nature Neuroscience , 13(11) , 1404-1412.

Modi M., Dhawale A.K., Bhalla U.S. , ( 2014 ), CA1 cell activity sequences emerge after reorganization of network correlation structure during associative learning , ELife , 3 , e01982.

Kawai R., Markman T., Poddar R., Ko R., Fantana A.L., Dhawale A.K., Kampff A.R., Ölveczky B.P. , ( 2015 ), Motor cortex is required for learning but not for executing a motor skill , Neuron , 86(3) , 800-812.

Dhawale A.K., Smith M.A., Ölveczky B.P. , ( 2017 ), The role of variability in motor learning , Annual Review of Neuroscience , 40 , 479-498.

Dhawale A.K., Miyamoto Y.R., Smith M.A., Ölveczky B.P. , ( 2019 ), Adaptive regulation of motor variability , Current Biology , 29(21) , 3551–3562.

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Pratima Pandey©, Umer S. Bhat, Anuradha Singh, Aiswarya Joy, Varun Birari, Nagesh Y. Kadam and Kavita Babu© , ( 2021 ), Dauer formation in C. elegans is modulated through AWC and ASI dependent chemosensation , Eneuro , 8(2)

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Pratima Pandey*©, Anuradha Singh*, Harjot Kaur, Anindya Ghosh-Roy and Kavita Babu© , ( 2021 ), Increased dopaminergic neurotransmission results in ethanol dependent sedative behaviors in Caenorhabditis elegans , PLoS Genetics , 17(2): , e1009346

Nagesh Kadam©, Sukanta Behera, Sandeep Kumar, Anindya Ghosh-Roy and Kavita Babu© , ( 2021 ), The G-protein coupled receptor SRX-97 is required for concentration dependent sensing of benzaldehyde in Caenorhabditis elegans , eNeuro , 8(01): , ENEURO.0011-20.2020.

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KA Zhivago, LS Sneha, Ranjini Garani, Simran Purokayastha, Naren P Rao, Aditya Murthy, Arun SP , ( 2020 ), Perceptual priming can increase or decrease with ageing , Frontiers in Aging Neuroscience

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Yin DM, Chen YJ, Lu YS, Bean JC, Sathyamurthy A, Shen C, Liu X, Lin TW, Smith CA, Xiong WC, Mei L , ( 2013 ), Reversal of behavioral deficits and synaptic dysfunction in mice overexpressing neuregulin 1 , Neuron , 78(4) , 644-657.

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Sathyamurthy A, Yin D, Barik A, Shen C, Bean JC, Figueiredo D, She JX, Xiong WC, Mei L , ( 2015 ), ERBB3-mediated regulation of Bergmann glia proliferation in cerebellar amination , Development , 142(3) , 522-32.

Sun X-D, Li L, Huang Z-H, Bean J.C., Jiao H-F, Barik A, Kim S-M, Liu F, Wu H, Shen C, Tian Y, Lin T.W., Bates R, Sathyamurthy A, Chen Y-J, Yin D-M, Xiong L, Lin H-P, Hu J-X, Li B-M, Gao T-M, Xiong W-C, Mei L, , ( 2016 ), Lrp4 in astrocytes modulates glutamatergic transmission , Nature Neuroscience , 19 , 1010–1018.

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Li L, Cao Yu, Wu H, Ye X, Shen C, Barik A, Xie X, Gan L, Xiong W-C, Mei L , ( 2016 ), Enzymatic Activity of the Scaffold Protein Rapsyn for Synapse Formation , Neuron , 92(5) , 1007-1019.

Ghitani N*, Barik A*, Szczot M*, Thompson J, Li C, Le Pichon C, Krashes M, Chesler A , ( 2017 ), Specialized mechanosensory nociceptors mediating rapid responses to hair pull , Neuron , 95 , 944-954.

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Solinski HR, Kriegbaum MC, Tseng PY, Earnest TW, Sainz E, Gu X, Barik A, Chesler AT, Hoon MA , ( 2019 ), Nppb Neurons Are Sensors of Mast Cell-Induced Itch , Cell Reports , 26(13) , 3561-3573.

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Mani S*, Radhakrishnan S, Cheramangalam RN, Shalini H, Rajendran S and Ramanan N* , ( 2020 ), Shh mediated increase in β-catenin levels maintains cerebellar granule neuron progenitors in proliferation , Cerebellum , 19 , 645–664.

Pramod RT & Arun SP , ( 2020 ), Improving Machine Vision using Human Perceptual Representations: The Case of Planar Reflection Symmetry for Object Classification , IEEE Transactions in Pattern Analysis and Machine Intelligence

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Muniak MA, Ray S, Hsiao SS, Dammann JF, Bensmaia SJ† , ( 2007 ), The neural coding of stimulus intensity: linking the population response of mechanoreceptive afferents with psychophysical behavior , Journal of Neuroscience , 27(43) , 11687-11699.

Ray S, Niebur E, Hsiao SS, Sinai A and Crone NE† , ( 2008 ), High-frequency gamma activity (80-150 Hz) is increased in human cortex during selective attention , Clinical Neurophysiology , 119(1) , 116-133.

Ray S†, Hsiao SS, Crone NE, Franaszczuk PJ and Niebur E , ( 2008 ), Effect of stimulus intensity on the spike-local field potential relationship in the secondary somatosensory cortex , Journal of Neuroscience , 28(29) , 7334-7343.

Ray S†, Crone NE, Niebur E, Franaszczuk PJ and Hsiao SS , ( 2008 ), Neural correlates of high-gamma oscillations (60-200 Hz) in macaque local field potentials and their potential implications in electrocorticography , Journal of Neuroscience , 28(45) , 11526-11536.

Salelkar S and Ray S , ( 2020 ), Interaction between steady-state visually evoked potentials at nearby flicker frequencies , Scientific Reports , 10 , 5344

Dubey A and Ray S , ( 2020 ), Comparison of tuning properties of gamma and high-gamma power in local field potential (LFP) versus electrocorticogram (ECoG) in visual cortex , Scientific Reports , 10 , 5422

Kanth ST and Ray S , ( 2020 ), Electrocorticogram (ECoG) is highly informative in primate visual cortex , Journal of Neuroscience , 40(12) , 2430-2444

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Ashwani Bhardwaj*, Pratima Pandey* and Kavita Babu , ( 2020 ), Control of locomotory behavior of Caenorhabditis elegans by the immunoglobulin superfamily protein RIG-3 , Genetics , 214(1): , 135-45

Basu Debaleena and A. Murthy , ( 2020 ), Parallel programming of saccades in the macaque frontal eye field: are sequential motor plans co-activated? , Journal of Neurophysiology , 123(1): , 107-119

Vina Tikiyani© and Kavita Babu© , ( 2019 ), Claudins in the brain: Unconventional functions in neurons , Traffic , 20(11): , 807-14

Agrawal A, Hari KVS & Arun SP , ( 2019 ), Reading Increases the Compositionality of Visual Word Representations , Psychological Science , 30: , 1707-1723

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Yogesh Dahiya©, Saloni Rose, Shruti Thapliyal, Shivam Bhardwaj, Maruthi Prasad and Kavita Babu© , ( 2019 ), Differential regulation of innate and learned behavior by CREB1/CRH-1 in Caenorabditis elegans , The Journal of Neuroscience , 39(40): , 7934-46

Kavita Babu© and Sandhya P Koushika© , ( 2019 ), Sydney Brenner (1927-2019) , Current Science , 16(12): , 2106-09

Banerjee, S., Grover, S., Ganesh, S. and Sridharan, D*. , ( 2019 ), Sensory and decisional components of endogenous attention are dissociable , Journal of neurophysiology , 122(4) , 1538-1554

Zhitao Hu*, Edward C.G. Pym*, Kavita Babu*, Amy B. Vahlishan Murray*, and Joshua M. Kaplan , ( 2011 ), A neuropeptide-mediated stretch response links muscle contraction to changes in neurotransmitter release , Neuron 2011 , 71(1) , 92-102.

Kavita Babu, Zhitao Hu, Shih-Chieh Chien, Gian Garriga and Joshua M. Kaplan , ( 2011 ), The Immunoglobulin super family protein RIG-3 prevents synaptic potentiation and regulates Wnt signaling , Neuron , 71(1) , 103-116.

Pratima Pandey, Ashwani Bhardwaj and Kavita Babu , ( 2017 ), Regulation of WNT Signaling at the Neuromuscular Junction by the Immunoglobulin Super-Family Protein RIG-3 in Caenorhabditis elegans , Genetics , 206(3) , 1521-1534.

Shruti Thapliyal, Amruta Vasudevan*, Yongming Dong*, Jihong Bai, Sandhya P. Koushika and Kavita Babu , ( 2018 ), The C-terminal of CASY-1/Calsyntenin regulates GABAergic synaptic transmission at the Caenorhabditis elegans neuromuscular junction , PLoS Genetics , 14(3): , e1007236

Shruti Thapliyal, Shruthi Ravindranath and Kavita Babu , ( 2018 ), Regulation of glutamate signaling in the sensorimotor circuit by CASY-1A/Calsyntenin in Caenorhabditis elegans , Genetics , 208(4): , 1553-64

Ashwani Bhardwaj*, Saurabh Thapliyal*, Yogesh Dahiya and Kavita Babu , ( 2018 ), FLP-18 functions through the G-protein coupled receptors NPR-1 and NPR-4 to modulate reversal length in Caenorhabditis elegans , The Journal of Neuroscience , 38(20): , 4641-54

Pallavi Sharma*, Lei Li*, Haowen Liu, Vina Tikiyani, Zhitao Hu© and Kavita Babu© , ( 2018 ), The Claudin-like protein, HPO-30, is required to maintain LAChRs at the Caenorhabditis elegans neuromuscular junction , The Journal of Neuroscience , 38(32): , 7072-87

Shruti Thapliyal and Kavita Babu , ( 2018 ), Pentylenetetrazole (PTZ)-induced Convulsion Assay to Determine GABAergic Defects in Caenorhabditis elegans , Bio-protocol , 8(17): , e2989

Vina Tikiyani, Lei Li, Pallavi Sharma, Haowen Liu, Zhitao Hu and Kavita Babu , ( 2018 ), Wnt secretion is regulated by the tetraspan protein HIC-1 through its interaction with Neurabin/NAB-1 , Cell Reports , 25(7): , 1856-71

Raunaq Deo*, Manish S. Kushwah*, Sukrut C. Kamerkar, Nagesh Y. Kadam, Srishti Dar, Kavita Babu, Anand Srivastava and Thomas J. Pucadyil , ( 2018 ), ATP-dependent membrane remodeling links EHD1 functions to endocytic recycling , Nature Communications , 9(1): , 5187

Shruti Thapliyal© and Kavita Babu© , ( 2019 ), C. elegans Locomotion: Finding Balance in Imbalance , Advances in Experimental Medicine and Biology , 1112: , 185-96

Puneet Singh, Ketan Jhunjhunwala, Albert Stezin, Abhishek Lenka, Pramod Kumar Pal, Ashitava Ghosal, Aditya Murthy , ( 2019 ), Basal ganglia contributions during the learning of a visuomotor rotation: effect of dopamine, deep brain stimulation and reinforcement , European Journal of Neuroscience , 50(8): , 3349-3364

Katti H & Arun SP , ( 2019 ), Are you from North or South India? A hard face classification task reveals systematic representational differences between humans and machines , Journal of Vision , 19(7) , 1-1

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Katti H, Peleen MV and Arun SP , ( 2019 ), Machine vision benefits from human contextual expectations , Scientific Reports , 9: , 2112

Biswas A and Ray S , ( 2019 ), Alpha neurofeedback has a positive effect for participants who are unable to sustain their alpha activity , eNeuro , 6(4)

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S-L. Lim, S. Padmala and L. Pessoa , ( 2009 ), Segregating the significant from the mundane on a moment-to-moment basis via direct and indirect amygdala contributions , Proceedings of the National Academy of Sciences , 106(39) , 16841-16846.

S. Padmala and L. Pessoa , ( 2010 ), Interactions between cognition and motivation during response inhibition , Neuropsychologia , 48(2) , 558-565.

S. Padmala and L. Pessoa , ( 2010 ), Moment-to-moment fluctuations in fMRI amplitude and inter-region coupling are predictive of inhibitory performance , Cognitive, Affective, and Behavioral Neuroscience , 10(2) , 279-297.

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S. Padmala and L. Pessoa , ( 2011 ), Reward reduces conflict by enhancing attentional control and biasing visual cortical processing , Journal of Cognitive Neuroscience , 23(11) , 3419-3432.

S. Padmala, A. Bauer and L. Pessoa , ( 2011 ), Negative emotion impairs conflict-driven executive control , Frontiers in Psychology , 2 , 192.

K. Hu, A. Bauer, S. Padmala and L. Pessoa , ( 2012 ), Threat of bodily harm has opposing effects on cognition , Emotion , 12(1) , 28-32.

J-M Choi, S. Padmala and L. Pessoa , ( 2012 ), Impact of state anxiety on the interaction between threat monitoring and cognition , Neuroimage , 59(2) , 1912-1923.

L. Pessoa, S. Padmala, A. Kenzer and A. Bauer , ( 2012 ), Interactions between cognition and emotion during response inhibition , Emotion , 12(1) , 192-197.

J. Kinnison, S. Padmala, J-M Choi and L. Pessoa , ( 2012 ), Network analysis reveals increased integration during emotional and motivational processing , The Journal of Neuroscience , 32(24) , 8361-8372.

K. Hu*, S. Padmala* and L. Pessoa , ( 2013 ), Interactions between reward and threat during visual processing , Neuropsychologia , 51(9) , 1763-1772.

J-M Choi*, S. Padmala*, P. Spechler and L. Pessoa , ( 2014 ), Pervasive competition between threat and reward in the brain , Social Cognitive and Affective Neuroscience , 9(6) , 737-750.

G. Bissonette, R. Gentry, S. Padmala, L. Pessoa and M. Roesch , ( 2014 ), Impact of appetitive and aversive outcomes on brain responses: linking the animal and human literatures , Frontiers in Systems Neuroscience , 8 , 24.

S. Padmala and L. Pessoa , ( 2014 ), Motivation versus aversive processing during perception , Emotion , 14(3) , 450-454.

B. McMenamin, S. Langeslag, M. Sirbu, S. Padmala and L. Pessoa , ( 2014 ), Network organization unfolds over time during periods of anxious anticipation , The Journal of Neuroscience , 34(34) , 11261-11273.

L-R Dougherty, S-L Blankenship, P-A Spechler, S. Padmala and L.Pesso , ( 2015 ), An fMRI Study of Cognitive Reappraisal in Children: Divergent Effects on Brain and Behavior , Journal of Psychopathology and Behavioral Assessment , 37 , 634-644.

J-M Choi*, S. Padmala* and L. Pessoa , ( 2015 ), Counteracting effect of threat on reward enhancements during working memory , Cognition and Emotion , 29 , 1517-1526.

Yokoyama T*, S. Padmala* and L. Pessoa , ( 2015 ), Reward learning and negative emotion during rapid attentional competition , Frontiers in Psychology , 6 , 269.

C. Sours, J. Kinnison, S. Padmala, R-P. Gullapalli and L. Pessoa , ( 2018 ), Altered segregation between task-positive and task-negative regions in mild traumatic brain injury , Brain Imaging and Behavior , 12(3) , 697-709.

S. Padmala, M. Sirbu and L. Pessoa , ( 2017 ), Potential reward reduces the adverse impact of negative distractor stimuli , Social Cognitive and Affective Neuroscience , 12 , 1402-1413.

S. Padmala*, N. Sambuco*, M. Codispoti and L. Pessoa. , ( 2018 ), Attentional capture by simultaneous pleasant and unpleasant emotional distractors , Emotion , 18(8) , 1189-1194.

C-T Meyer*, S. Padmala* and L. Pessoa , ( 2019 ), Dynamic threat processing , Journal of Cognitive Neuroscience , 31(4) , 522-542.

Dubey A and Ray S , ( 2019 ), Cortical electrocorticogram (ECoG) is a local signal , Journal of Neuroscience , 39(22) , 4299-4311

Prabaha Gangopadhyay and Jhilik Das , ( 2019 ), Do Primates and Deep Artificial Neural Networks Perform Object Categorization in a Similar Manner? , Journal of Neuroscience , 39(6): , 946-948;

Sharath Umesh,Shweta Pant,Srivani Padmaa, Sumitash Jana, Varsha Vasudevan, Aditya Murthy, Sundarrajan Asokan , ( 2019 ), A novel Fibre-Bragg grating system for eye tracking , Journal of Advanced Research , 16: , 24-34

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Sartorel E, Ünlü C, Jose M, Massoni-Laporte A, Meca J, Sibarita JB, McCusker D , ( 2018 ), Phosphatidylserine and GTPase activation control Cdc42 nanoclustering to counter dissipative diffusion , Molecular Biology of the Cell , 29(11) , 1299-1310

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Ray S., Bhutani N and Murthy A. , ( 2012 ), Mutual inhibition and capacity sharing during parallel preparation of serial eye movements , Journal of Vision , 12(3) , 17-17.

Ramakrishnan, A., Sureshbabu Ramakrishnan and Murthy A. , ( 2012 ), Understanding how the brain changes its mind: microstimulation in the macaque frontal eye field reveals how saccade plans are changed , Journal of Neuroscience. , 32(13) , 4457- 4472.

Ray S., Bhutani N., V. Kapoor and Murthy A. , ( 2011 ), Trans-saccadic integration of visual and motor processing during sequential eye movements , Experimental Brain Research , 215(1) , 13-25.

Farooqui AA, Bhutani N, Kulashekhar S, Behari M, Goel V, Murthy A. , ( 2011 ), Impaired conflict monitoring in Parkinson’s disease patients during an oculomotor redirect task , Exp Brain Res. , 208(1) , 1-10.

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