2016
Anand A, Murthy CM†, and Ray S† (2025) Burst Estimation through Atomic Decomposition (BEAD): A Toolbox to find Oscillatory Bursts in Brain Signals. Imaging Neuroscience, Imaging Neuroscience:1-15
Aggarwal S, and Ray S† (2025) Changes in Higuchi’s fractal dimension across age in healthy human EEG are anti-correlated with changes in oscillatory power and 1/f slope, European Journal of Neuroscience:1-54
Biswas A#, Kumar WS#, Sharma K# and Ray S† (2025) Stimulus-induced gamma sources reduce in power but not in spatial extent with healthy aging in human EEG, European Journal of Neuroscience, 61(10):e70138 (# indicates joint first author)
Srivatzen, Shweta Pant, U. Sharath, Aditya Murthy,Sundarrajan Asokan (2025) A wearable fiber Bragg grating-based eye-tracking device for monitoring saccadic eye movements for neurological assessments, Optical Fiber Technology, 90:104101
Jacob G, Pramod RT & Arun SP (2025) Visual homogeneity computations in the brain enable solving property-based visual tasks, eLife, 13:RP93033
Cherian T & Arun SP (2024) What do we see behind an occluder? Amodal completion of statistical properties in complex objects, Attention Perception and Psychophysics, 86:2721-2739
Jagat Narayan Prajapati, Devanshi Piyush Shah, Arnab Barik (2025) An intra-brainstem circuitry for pain-induced inhibition of itch, IBRO Neuroscience, 568:95-107
Reddy, Prannay; Narayan Prajapati, Jagat; Chaterji, Shrivas; Varughese, Austin; Chaudhary, Yatika; Sathyamurthy, Anupama; Barik, Arnab (2024) Converging inputs compete at the lateral parabrachial nuclei to dictate the affective-motivational responses to cold pain, PAIN, 00:1-13
Krishnakumaran R, Pavuluri A, and Ray S† (2025) Delayed accumulation of inhibitory input explains gamma frequency variation with changing contrast in an Inhibition Stabilized Network, Journal of Neuroscience, 45 (5): e1279242024
Prakash SS, Mayo JP and Ray S† (2024) Dissociation of attentional state and behavioral outcome using local field potentials, eNeuro, 11(11):1-17
Divya Gulati and Supratim Ray (2024) Auditory and Visual Gratings Elicit Distinct Gamma Responses, eNeuro, 11(4):1-14
Sidrat Tasawoor Kanth and Supratim Ray (2024) Gamma Responses to Colored Natural Stimuli Can Be Predicted from Local Low-Level Stimulus Features, eNeuro, 11(7):1-18
Yuko Fukata, Masaki Fukata, Harold D MacGillavry, Deepak Nair, Eric Hosy (2024) Celebrating the Birthday of AMPA Receptor Nanodomains: Illuminating the Nanoscale Organization of Excitatory Synapses with 10 Nanocandles, Journal of Neuroscience, 44(23):1-18
Sarmistha Mahanty, Ptissam Bergam, Vivek Belapurkar, Litralson Eluvathingal, Nikita Gupta, Bruno Goud, Deepak Nair, Graça Raposo, Subba Rao Gangi Setty (2024) Biogenesis of specialized lysosomes in differentiated keratinocytes relies on close apposition with the Golgi apparatus, Cell Death & Disease, 496:1-16
Ankita Sengupta, Sanjna Banerjee, Suhas Ganesh, Shrey Grover & Devarajan Sridharan (2024) The right posterior parietal cortex mediates spatial reorienting of attentional choice bias, Nature Communications, 15:6938
Varsha V, Radhakant P, Murthy A. (2024) Modeling kinematic variability reveals displacement and velocity based dual control of saccadic eye movements, Experimental Brain Research, 242:2159–2176
Sawant Y., Kundu J.N., Radhakrishnan V.B., Sridharan D. (2022) A Midbrain Inspired Recurrent Neural Network Model for Robust Change Detection, Journal of Neuroscience, 42 (44):8262-8283
Chinchani A.M., Paliwal S., Ganesh S., Chandrasekhar V., Yu B.M., Sridharan D. (2022) Tracking momentary fluctuations in human attention with a cognitive brain-machine interface, Communications Biology, 5:1346
Sreenivasan V., Kumar S., Pestilli F., Talukdar P., Sridharan D. (2022) GPU-accelerated connectome discovery at scale, Nature Computational Science, 2:298-306
Chauhan K., Umapathi B.M., Shenoy P., Sridharan D. (2022) Robust outlier detection by de-biasing VAE likelihoods, Computer Vision and Pattern Recognition (CVPR):9871-9880
Srivastava A., Shenoy p., Sridharan D. (2023) Avoiding Catastrophic Referral Failures In Medical Images Under Domain Shift, ICLR Workshop on Domain Generalization (Oral Presentation):1-14
Umapathi B.M., Chauhan K., Shenoy P., Sridharan D. (2023) Shaken, and Stirred: Long-Range Dependencies Enable Robust Outlier Detection with PixelCNN++, International Joint Conference on Artificial Intelligence (IJCAI), 32:1440-1450
Halder S., Raya D.V., Sridharan D. (2024) Distinct neural bases of subcomponents of the attentional blink. eLife 13:RP97098, eLife, 97098.1:1-50
Shah P.D.,Sharma R. P., Agarwal R., Barik A. (2024) A septo-hypothalamic-medullary circuit directs stress-induced analgesia, eLife, 96724.1:1-36
Jaiswal S, Chakravarthula LN and Padmala S., (2024) Additive effects of monetary loss and positive emotion in the human brain., eNeuro., 11(4):1-18
Sivakumaran S, Chakravarthula LN and Padmala S., (2024) Role of contingency in reward-emotion interactions during the categorization of emotional facial expressions., Motivation Science., 10(2):149–154
Thumu S. C. R., Jain M., Soman S., Das S., Verma V., Nandi A., Gutmann D. H., Jayaprakash B., Nair D., Clement J. P., Marathe S., Ramanan S. (2024) SRF-deficient astrocytes provide neuroprotection in mouse models of excitotoxicity and neurodegeneration, eLife, 95577:1-28
Chandrasekaran A. N., Vermani A., Gupta P., Steinmetz N., Moore T., Sridharan D. (2024) Dissociable components of attention exhibit distinct neuronal signatures in primate visual cortex, Science Advances, 10(5):2375-2548
Gupta P., Sridharan D. (2024) Presaccadic attention does not facilitate the detection of changes in the visual field, PLOS Biology, 22(1):1-28
Das A, Nandi N and Ray S (2024) Alpha and SSVEP power outperforms Gamma power in capturing Attentional Modulation in Human EEG. Cerebral Cortex , Cerebral Cortex, 34(1):1-36
S Kedia, K Mandal, PR Netrakanti, M Jose, SS Sisodia, and D Nair (2021) Nanoscale organization of Nicastrin, the substrate receptor of the γ-secretase complex, as independent molecular domains, Molecular Brain, 14(1):158
Venkatesan, S., and Nair, D. (2020) New Immunostaining Analysis Reveals Spatial and Molecular Variability in Synaptic Scaling, Neuroonline
Belapurkar V., Swamy M.H.S, Singh, N., Kedia S., Gangi Setty S.R., Jose M., Nair D. (2023) Real time heterogeneity of supramolecular assembly of Amyloid Precursor Protein is modulated by an endocytic risk factor PICALM., Cellular and Molecular Lifesciences, 80
Chakravarthula LN and Padmala S (2023) Negative emotion reduces the discriminability of reward outcomes in the ventromedial prefrontal cortex, Social Cognitive and Affective Neuroscience, 18(1):01-10
Prannay Reddy, Jayesh Vasudeva, Devanshi Shah, Jagat Narayan Prajapati, Nikhila Harikumar, Arnab Barik. (2023) A Deep-Learning Driven Investigation of the Circuit Basis for Reflexive Hypersensitivity to Thermal Pain, Neuroscience, 530:158-172
Jensen K.T., Kadmon Harpaz N., Dhawale A.K., Wolff S.B.E., Ölveczky B.P. (2022) Long-term stability of single neuron activity in the motor system, Nature Neuroscience, 25:1664–1674.
Aggarwal S and Ray S (2023) Slope of the power spectral density flattens at low frequencies (<150 Hz) with healthy aging but also steepens at higher frequency (>200 Hz) in human electroencephalogram, Cerebral Cortex Communications, 4(2)
Krishnakumaran R and Ray S (2023) Temporal characteristics of gamma rhythm constrain properties of noise in an inhibition-stabilized network model, Cerebral Cortex, 33(18):10108-10121
Kumar WS and Ray S (2023) Healthy aging and cognitive impairment alter EEG functional connectivity in distinct frequency bands, European Journal of Neuroscience, 58:3432-49
Pramod R.T., Katti H and Arun S.P (2022) Human peripheral blur is optimal for object recognition, Vision Research, 200:1-10
Arun S.P (2022) Using compositionality to understand parts in whole objects, European Journal of Neuroscience, 56:4378–4392
Passi A and Arun S.P (2022) The Bouba–Kiki effect is predicted by sound properties but not speech properties, Attention Perception and Psychophysics, 86:976–990
Varsha V, Atul Gopal, Sumitash Jana, Radhakant Padhi, Aditya Murthy (2023) Velocity tracking control best explains the modulation of saccade kinematics during eye-hand coordination, Eur. J Neurosci., 58(1):2232-2247
D’Souza, N., Ramakrishna, S., Radhakrishna, .K., Jhaveri, V., Ravindran, S., Yeramala, L., Nair, D.,Palakodeti, D., Muddashetty, R.S (2022) Function of FMRP domains in regulating distinct roles of neuronal protein synthesis, Molecular Neurobiology, 59(12):7370-7392
Haukedal, H.; Corsi, GI.; Gadekar, VP.;Doncheva, NT.; Kedia, S.; de Haan, N.; Chandrasekaran, A.;Jensen, P.; Schiønning, P.; Vallin, S.; Marlet, FR.; Poon, A.; Pires, C.; Agha, FK.; Wandall, HH.; Cirera, S.; Simonsen, AH.; Nielsen, TT.; Nielsen, JE.; Hyttel, P.; Muddashetty, R.; Aldana, B.; Gorodkin, J.; Nair, D.; Meyer, M.; Larsen, MR.; Freude, K. (2023) Golgi fragmentation – One of the earliest organelle phenotypes in Alzheimer’s disease neurons, Frontiers in Neuroscience, 17
Mangalwedhekar, M., Singh, N., Thakur, C.S., Seelamantula, C.S., Jose, M., Nair, D. (2023) Achieving nanoscale precision using Neuromorphic localization microscopy, Nature Nanotechnology, 18(4):380-389
Babu kavita (2022) Perceptions on preprints, peer review and publication charges, Current Science, 123(10):1187-1188 (Editorial)
Kiran K. Kolathur*©, Pallavi Sharma*, Nagesh Y. Kadam, Navneet Shahi, Ane Nishitha, Kavita Babu© (2023) Pre-mRNA splicing function of the ubiquitin-like protein Hub1/UBL-5 in Caenorhabditis elegans, FEBS Letters, 597(3):448-457
Pratima Pandey©, Gazaldeep Kaur and Kavita Babu© (2022) Crosstalk between neurons and glia through G-protein coupled receptors: Insights from Caenorhabditis elegans, Progress in Molecular Biology and Translational Science, 193(1):119-144
Vandita S. Bhat©, Jagannath Jayaraj and Kavita Babu© (2022) RNA and neuronal function: the importance of post-transcriptional regulation, Oxford Open Neuroscience, Vol 1
Satya Rungta, Aditya Murthy. (2023) Context-specific early recruitment of small motor units in the shoulder muscle reflects a reach movement plan, J. Neurophysiology, 129(5):1094-1113
Pattisapu S and Ray S (2023) Stimulus-induced narrow-band gamma oscillations in humans can be recorded using open-hardware low-cost EEG amplifier, PLoS One, 18(1)
Rajeev P., Singh N., Kechkar A., Butler C., Ramanan N., Sibarita J.B., Jose M., Nair D. (2022) Nanoscale Regulation of Ca2+ dependent phase transitions and real time dynamics of SAP97/hDLG, Nature Communications, 13(1): 4236.
Chakravarthula LN and Padmala S. (2022) Arousal-driven interactions between reward motivation and categorization of emotional facial expressions, Frontiers in Psychology (Emotion Science), 13:1-12
SG Dastidar, D Nair (2022) A Ribosomal Perspective on Neuronal Local Protein Synthesis, Frontiers in Molecular Neuroscience, 15:1-14
AP Kumar, N Singh, D Nair, A Justin (2022) Neuronal PET tracers for Alzheimer’s disease, Biochemical and Biophysical Research Communications, 587:58-62
Rajeev P., Singh N., Kechkar A., Butler C., Ramanan N., Sibarita J.B., Jose M., Nair D. (2022) Nanoscale regulation of Ca2+ dependent phase transitions and real-time dynamics of SAP97/hDLG., Nature Communications, 4236:1-18
Basu D., Sendhilnathan N. and Aditya Murthy (2022) Neck muscle activity reflects neural patterns of sequential saccade planning in head-restrained primates, Journal of Neurophysiology, 128(4):927-933
Shirhatti V, Ravishankar P and Ray S (2022) Gamma oscillations in primate primary visual cortex are severely attenuated by small stimulus discontinuities, PLoS Biology, 20(6):1-23
Prakash SS, Mayo JP and Ray S (2022) Decoding of attentional state using local field potentials, Current Opinion in Neurobiology, 76
Katti H & Arun SP (2022) A separable neural code in monkey IT enables perfect CAPTCHA decoding, Journal of Neurophysiology, 127:869-884
Agrawal A, Nag S, Hari KVS & Arun SP (2022) Letter processing in upright bigrams predicts reading fluency variations in children, Journal of Experimental Psychology, 151(9):2237–2249
Pramod RT & Arun SP (2022) Improving Machine Vision using Human Perceptual Representations: The Case of Planar Reflection Symmetry for Object Classification, IEEE Transactions in Pattern Analysis and Machine Intelligence, 44:228-241
Somraj N, Kashi MS, Arun SP, Soundararajan R (2022) Understanding the perceived quality of video predictions, Signal Processing, 102:1-11
Devanshi Piyush Shah and Arnab Barik (2022) The Spino-Parabrachial Pathway for Itch, Front Neural Circuits, 16:1-7
Liza K and Ray S (2022) Local interactions between steady-state visually evoked potentials at nearby flickering frequencies, Journal of Neuroscience, 42(19):3965-3974
Ray S (2022) Spike–Gamma Phase Relationship in the Visual Cortex, Annual Review of Vision Sciences, 8:1
Umer S. Bhat*, Navneet Shahi*, Siju Surendran* and Kavita Babu (2021) Neuropeptides and Behaviors: How Small Peptides Regulate Nervous System Function and Behavioral Outputs, Frontiers in Molecular Neuroscience, 14:1-16
Anuradha Singh, Kavita Babu© and Pratima Pandey© (2021) Ethanol Induced Sedative Behavior: An assay to investigate increased dopamine signaling in C. elegans, Bio-protocol, 11:1-8
Murty DVPS and Ray S (2022) Stimulus-induced robust narrow-band gamma oscillations in human EEG using cartesian gratings, Bio-protocol, 12(7)
Krishnakumaran R, Raees M, Ray S (2022) Shape analysis of gamma rhythm supports a superlinear inhibitory regime in an inhibition-stabilized network, PLoS Computational Biology, 18(2):1-27
Kumar WS, Manikandan K, Murty DVPS, Ramesh RG, Purokayastha S, Javali M, Rao NP and Ray S (2022) Stimulus-induced narrowband gamma oscillations are test-retest reliable in healthy elderly in human EEG, Cerebral Cortex Communications, 3(1)
Meenakshi Prabod Kumar et al (2022) Novel measures of Morris water maze performance that use vector field maps to assess accuracy, uncertainty, and intention of navigational searches, Hippocampus, 32(4):264-285
Shridhar, S. et al (2022) A new paradigm for investigating temporal order memory shows higher order associations are present in recent but not in remote retrieval, Exp. Brain Res. 2021 1, 240(2):611-629
Jacob G, Katti H, Cherian T, Das J, Zhivago KA & Arun SP (2021) A naturalistic environment to study visual cognition in unrestrained monkeys, eLife, 10:1-30
A G Ramakrishnan, (2020) Cardiorespiratory and endocrine mechanisms behind the effectiveness of pranayama, in the book “Evidence-based Perspectives on the Psychophysiology of Yoga and Its Applications,” published by IGI Global, edited by Dr. Shirley Telles., 10:577
Neelam Sinha, Manojkumar Saranathan and A. G. Ramakrishnan (2010) Dynamic MR imaging using generalized series, International Journal of Magnetic Resonance Imaging, 2(1):3-21
Neelam Sinha, Manojkumar Saranathan and A. G. Ramakrishnan (2010) Improved kt-BLAST for fast fMRI imaging, Journal of Magnetic Resonance,, 204:273-280
Neelam Sinha, A. G. Ramakrishnan and Manojkumar Saranathan, (2010) Composite MR image reconstruction and unaliasing for general trajectories using neural networks, Magnetic resonance imaging, 28(10):1468-1484
A Ramesh, C Jagdish, M Nagapoorinima, PN Suman Rao, AG Ramakrishnan, GC Thomas, M Dominic, A Swarnarekha, (2012) Low cost calibrated mechanical noisemaker for hearing screening of neonates in resource constrained settings, The Indian journal of medical research, 135(2):170-176
A. G. Ramakrishnan, A.P. Prathosh and T. V. Ananthapadmanabha, (2014) Threshold-independent QRS detection using the dynamic plosion index, IEEE Signal Processing Letters, 21(5):554-558
TP Jerrin, AG Ramakrishnan, (2021) Decoding Imagined Speech from EEG using Transfer Learning, IEEE Access, 9:135371-135383
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Arnab Nandi, Garima Virmani, Aatmika Barve, Swananda Marathe (2021) DBscorer: an open source software for automated accurate analysis of rodent behavior in forced swim test and tail suspension test, eNeuro, 8 (6):1-10
Jose M Sivanand A Channakeshava C (2021) Cholesterol is a critical determinant for hippocampal neuronal polarity, Frontiers in Molecular Neuroscience, 14:1-13
Kedia S., Mandal K., Netrakanti P.R., Jose M., Sisodia S.S., Nair D. (2021) Nanoscale organization of Nicastrin, the Substrate Receptor of the γ-Secretase Complex, as Independent Molecular Domains, Molecular Brain, 14(1):158
Akshay Jagatap, Hritik Jain, Simran Purokayastha, Devarajan Sridharan (2021) Neurally-constrained modeling of human gaze strategies in a change blindness task, PLoS Computational Biology, 10:1-34
Basu D., Sendhilnathan N., Murthy A. (2021) Neural mechanisms underlying the temporal control of sequential saccade planning in the frontal eye field, Proc Natl Acad Sci U S A., 118 (40):1-8
Kedia, S., and Nair, D. (2020) Nanoscale rearrangement of APP organization as a therapeutic target for Alzheimer’s disease, Medical Hypotheses, 143:1-5
Marathe, P., Mahadeva Swamy, H.S., Nair, D, Bhattacharya, D. (2020) mEosBrite are bright variants of mEos3.2 developed by semirational protein engineering, Journal of Fluorescence, 30(3):703–715.
Venkatesan, S., Subramaniam, S., Rajeev, P., Chopra, Y., Jose, M., and Nair, D. (2020) Differential scaling of synaptic molecules within functional zones of an excitatory synapse during homeostatic plasticity, eNeuro, 7(2).:1-16
Kedia, S., Ramakrishna, P., Netrakanti, P.R., Jose, M., Sibarita, J.-B., Nadkarni, S., and Nair, D. (2020) Real-time Nanoscale Organization of Amyloid Precursor Protein, Nanoscale, 12(15):8200-8215.
Koltun, B., Ironi, S., Gershoni-Emek, N., Barrera, I., Hleihil, M., Nanguneri, S., Sasmal, R., Agasti, S.S., Nair, D., and Rosenblum, K. (2020) Measuring mRNA translation in neuronal processes and somata by tRNA-FRET, Nucleic Acids Research, 48(6):1-19
Venkatachalapathy, M., Belapurkar, V., Jose, M., Gautier, A., and Nair, D. (2019) Live cell super resolution imaging by radial fluctuations using fluorogen binding tags, Nanoscale, 11(8):3626-3632.
Nanguneri, S., Pramod, R., Efimova, N., Das, D., Jose, M., Svitkina, T., and Nair, D. (2019) Characterization of nanoscale organization of F-actin in morphologically distinct dendritic spines in vitro using supervised learning, eNeuro, 6(4):1-13
Kommaddi, R.P., Tomar, D.S., Karunakaran, S., Bapat, D., Nanguneri, S., Ray, A., Schneider, B.L., Nair, D., and Ravindranath, V. (2019) Glutaredoxin1 Diminishes Amyloid Beta-Mediated Oxidation of F-Actin and Reverses Cognitive Deficits in an Alzheimer’s Disease Mouse Model, Antioxidants & Redox Signaling, 31(18):1321-1338.
Kommaddi, R.P., Das, D., Karunakaran, S., Nanguneri, S., Bapat, D., Ray, A., Shaw, E., Bennett, D.A., Nair, D., and Ravindranath, V. (2018) Aβ mediates F-actin disassembly in dendritic spines leading to cognitive deficits in Alzheimer’s disease, Journal of Neuroscience, 38(5):1085-1099.
Harper, C.B., Papadopulos, A., Martin, S., Matthews, D.R., Morgan, G.P., Nguyen, T.H., Wang, T., Nair, D., Choquet, D., and Meunier, F.A. (2016) Botulinum neurotoxin type-A enters a non-recycling pool of synaptic vesicles, Scientific reports, 6(1):1-13
Jose, M., Tollis, S., Nair, D., Mitteau, R., Velours, C., Massoni-Laporte, A., Royou, A., Sibarita, J.-B., and McCusker, D. (2015) A quantitative imaging-based screen reveals the exocyst as a network hub connecting endocytosis and exocytosis, Molecular biology of the cell, 26:2519-2534.
Widera, D., Klenke, C., Nair, D., Heidbreder, M., Malkusch, S., Sibarita, J.-B., Choquet, D., Kaltschmidt, B., Heilemann, M., and Kaltschmidt, C. (2016) Single-particle tracking uncovers dynamics of glutamate-induced retrograde transport of NF-κB p65 in living neurons, Neurophotonics, 3(4):1-7
Chazeau, A., Mehidi, A., Nair, D., Gautier, J.J., Leduc, C., Chamma, I., Kage, F., Kechkar, A., Thoumine, O., and Rottner, K. (2014) Nanoscale segregation of actin nucleation and elongation factors determines dendritic spine protrusion, The EMBO journal, 33(23):2745-2764.
Fraisier, V., Kasri, A., Miserey-Lenkei, S., Sibarita, J.-B., Nair, D., Mayeux, A., Bardin, S., Toyoda, Y., Poser, I., and Poznyakovskiy, A. (2013) C11ORF24 is a novel type I membrane protein that cycles between the Golgi apparatus and the plasma membrane in Rab6-positive vesicles, PloS one, 8(12):1-14
Nair, D., Hosy, E., Petersen, J.D., Constals, A., Giannone, G., Choquet, D., and Sibarita, J.-B. (2013) Super-resolution imaging reveals that AMPA receptors inside synapses are dynamically organized in nanodomains regulated by PSD95, Journal of Neuroscience, 33(32):13204-13224.
Kechkar, A., Nair, D., Heilemann, M., Choquet, D., and Sibarita, J.-B. (2013) Real-time analysis and visualization for single-molecule based super-resolution microscopy, PLoS One, 8(4):1-10
Jose, M., Tollis, S., Nair, D., Sibarita, J.-B., and McCusker, D. (2013) Robust polarity establishment occurs via an endocytosis-based cortical corralling mechanism, Journal of Cell Biology, 200(4):407- 418.
Rossier, O., Octeau, V., Sibarita, J.-B., Leduc, C., Tessier, B., Nair, D., Gatterdam, V., Destaing, O., Albiges-Rizo, C., and Tampé, R. (2012) Integrins β 1 and β 3 exhibit distinct dynamic nanoscale organizations inside focal adhesions, Nature cell biology, 14(10):1057-1067.
Hoze, N., Nair, D., Hosy, E., Sieben, C., Manley, S., Herrmann, A., Sibarita, J.-B., Choquet, D., and Holcman, D. (2012) Heterogeneity of AMPA receptor trafficking and molecular interactions revealed by superresolution analysis of live cell imaging, Proceedings of the National Academy of Sciences, 109(42):17052-17057.
Heidbreder, M., Zander, C., Malkusch, S., Widera, D., Kaltschmidt, B., Kaltschmidt, C., Nair, D., Choquet, D., Sibarita, J.-B., and Heilemann, M. (2012) TNF-α influences the lateral dynamics of TNF receptor I in living cells, Biochimica et Biophysica Acta (BBA)-Molecular Cell Research, 1823(10):1984-1989.
Izeddin, I., Boulanger, J., Racine, V., Specht, C.G., Kechkar, A., Nair, D., Triller, A., Choquet, D., Dahan, M., and Sibarita, J.B. (2012) Wavelet analysis for single molecule localization microscopy, Opt Express, 20(3):2081-2095.
Jose, M., Nair, D.K., Altrock, W.D., Dresbach, T., Gundelfinger, E.D., and Zuschratter, W. (2008) Investigating interactions mediated by the presynaptic protein bassoon in living cells by Foerster’s resonance energy transfer and fluorescence lifetime imaging microscopy, Biophysical journal, 94(4):1483-1496.
Jose, M., Nair, D.K., Reissner, C., Hartig, R., and Zuschratter, W. (2007) Photophysics of Clomeleon by FLIM: discriminating excited state reactions along neuronal development, Biophysical journal, 92(6):2237-2254.
Nair, D.K., Jose, M., Kuner, T., Zuschratter, W., and Hartig, R. (2006) FRET-FLIM at nanometer spectral resolution from living cells, Optics express, 14(25):12217-12229.
Kedia, S., Ramanan, N., Nair, D. (2021) Quantifying molecular aggregation by super resolution microscopy within an excitatory synapse from mouse hippocampal neurons, STAR protocols, 2 (2):1-11
Lankipalli, S., Mahadeva Swamy, H.S., Selvam, D., Samanta, D., Nair, D.,Ramgopal, U. (2021) Cryptic association of B7-2 molecules and its implication for clustering, Protein Science., 30(9):1958-1973
Mandal,P., Belapurkar, V., Nair, D Ramanan, N. (2021) Vinculin-mediated axon growth requires interaction with actin but not talin in mouse neocortical neurons, Cellular and Molecular Life Sciences online, 78:5807-5826
Tanwar,M., Kateriya,S., Nair, D., Jose,M. (2021) Optogenetic modulation of real-time nanoscale dynamics of HCN channels using photoactivated adenylyl cyclases, RSC Chemical Biology, 2(3):863-875
Nair, D., Kedia, S., Jose,M. (2021) Does altered probability of real-time diffussional collissions of membrane molecules trigger or delay Alzheimer’s Disease, iScience Notes
Kedia, S., Ramakrishna, P., Netrakanti, P.R., Singh, N., Sisodia, S.S., Jose, M., Sathish Kumar, Mahadevan, A., Ramanan, N., Nadkarni, S., and Nair, D. (2021) Alteration in synaptic nanoscale organization dictates amyloidogenic processing in Alzheimer’s disease, iScience,, 24(3):1-27
Rungta S.P., Basu D., Sendhilnathan N. and Aditya Murthy. (2021) Preparatory activity links frontal eye field activity with small amplitude motor unit recruitment of neck muscles during gaze planning, J. Neurophysiology, 126:451–463
Jain M, Das S, Lu PPY, Virmani G, Soman S, Thumu SCR, Gutmann DH, Ramanan N (2021) SRF is required for maintenance of astrocytes in non-reactive state in the mammalian brain, Eneuro, 8(1).:1-15
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Meenakshi Prabod Kumar; Suraj Kumar; Balaji Jayaprakash (2021) In vivo Imaging of Immediate Early Gene expression dynamics segregates neuronal ensemble of memories of dual events, Molecular Brain, 14(1):1-19
Murty DVPS, Manikandan K, Kumar WS, Ramesh RG, Purokayastha S, Nagendra B, Abhishek ML, Balakrishnan A, Javali M, Rao NP and Ray S (2021) Stimulus-induced Gamma rhythms are weaker in human elderly with Mild Cognitive Impairment and Alzheimer’s Disease, Elife, 10:1-22
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Ashwani Bhardwaj*, Saurabh Thapliyal*, Yogesh Dahiya and Kavita Babu (2018) FLP-18 functions through the G-protein coupled receptors NPR-1 and NPR-4 to modulate reversal length in Caenorhabditis elegans, The Journal of Neuroscience, 38(20):4641-4654
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Vina Tikiyani, Lei Li, Pallavi Sharma, Haowen Liu, Zhitao Hu and Kavita Babu (2018) Wnt secretion is regulated by the tetraspan protein HIC-1 through its interaction with Neurabin/NAB-1, Cell Reports, 25(7):1856-1871
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Shruti Thapliyal© and Kavita Babu© (2019) C. elegans Locomotion: Finding Balance in Imbalance, Advances in Experimental Medicine and Biology, 1112:185-196
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L-R Dougherty, S-L Blankenship, P-A Spechler, S. Padmala and L.Pesso (2015) An fMRI Study of Cognitive Reappraisal in Children: Divergent Effects on Brain and Behavior, Journal of Psychopathology and Behavioral Assessment, 37:634-644.
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Marathe S, D'almeida PL, Virmani G, Bathini P, Alberi L (2018) Effects of Monoamines and Antidepressants on Astrocyte Physiology: Implications for Monoamine Hypothesis of Depression, Journal of Experimental Neuroscience, 23:1-7
Das A and Ray S (2018) Spike-Gamma phase relationship in visual cortex, Frontiers in Computational Neuroscience, 8:361-381
Saxena R, Barde W, and Deshmukh SS (2018) Inexpensive, scalable camera system for tracking rats in large spaces, Journal of Neurophysiology, 120:2383–2395
Jana S. and Murthy A (2018) Task context determines whether common or separate inhibitory signals underlie the control of eye-hand movements, Journal of Neurophysiology, 120:1695-1711
Venkataratamani PV and Murthy A (2018) Distinct mechanisms explain the control of reach speed planning: evidence from a race model framework, Journal of Neurophysiology, 120:1293-1306
Salelkar S, Somasekhar GM, and Ray S (2018) Distinct frequency bands in the local field potential are differently tuned to stimulus drift rate, Journal of Neurophysiology, 120:681-692
Sharath Umesh, Shweta Pant, Srivani Padma Goggi, Sundarrajan Asokan, Sumitash Jana, Varsha Vasudevan and Murthy A. (2018) Method and device for tracking eye movement of a subject, Indian Provisional Patent, 97(4):12
Ratan Murty NA & Arun SP (2018) Multiplicative mixing of object identity and image attributes in single inferior temporal neurons., PNAS, 115(14):E3276-E3285
Shirhatti V and Ray S (2018) Long wavelength (Reddish) hues induce unusually large gamma oscillations in the primate primary visual cortex, PNAS, 115:4489-4494
Dinavahi MVPS*, Shirhatti V*, Ravishankar P* and Ray S (2018) Large visual stimuli induce two distinct gamma oscillations in primate visual cortex, Journal of Neuroscience, 38:2730-2744
Kommaddi RP, Das D, Karunakaran S, Nanguneri S, Bapat D, Ray A, Shaw E, Bennett DA, Nair D, Ravindranath V (2018) Aβ mediates F-actin disassembly in dendritic spines leading to cognitive deficits in Alzheimer’s disease, J Neuroscience, 38:1085–1099.
Pramod RT & Arun SP (2018) Symmetric objects become special in perception due to generic computations in neurons, Psychological Science, 29:95-109
Subhash Chandran KS, Seelamantula CS, and Ray S (2018) Duration Analysis Using Matching Pursuit Algorithm Reveals Longer Bouts of Gamma Rhythm, Journal of Neurophysiology, 119(3):808-821
Biswas A and Ray S (2017) Control of alpha rhythm (8-13 Hz) using neurofeedback, Journal of the Indian Institute of Science, 97:527-531
Venkataratamani PV, Gopal Atul PA, Murthy A. (2018) An independent race model involving an abort and re-plan strategy explains reach redirecting movements during planning and execution, European Journal of Neuroscience, 47:460-478
Jana Sumitash, Gopal Atul PA. and Murthy A. (2017) A Computational Framework for Understanding Eye–Hand Coordination, J. Indian Inst. Sci., 97(4):543–554
Banerjee, S., Grover, S., & Sridharan, D*. (2017) Unraveling Causal Mechanisms of Top-Down and Bottom-Up Visuospatial Attention with Non-invasive Brain Stimulation, Journal of the Indian Institute of Science, 97(4):451-475
P Meenakshi and J Balaji (2017) Neural Circuits of Memory Consolidation and Generalisation, Journal of the Indian Institute of Science, 97:487–495
Varsha V, Radhakant Padhi, Murthy A (2017) A Stochastic Feedback Model to Simulate Saccadic Eye Movement Variability, IFAC-PapersOnLine, 50(1):13521-13525
Singh A and J Balaji (2017) Sensitive Estimation of Flavor Preferences in STFP Using Cumulative Time Profiles, Bio-protocol, 7(21):1-21
Jain D, Jakhalekar IR, Deshmukh SS (2017) Navigational strategies and their neural correlates, Journal of the Indian Institute of Science, 97 (4):511-525
Donlea JN, Ramanan N, Silverman N and Shaw PJ (2014) Genetic rescue of functional senescence in synaptic and behavioral plasticity, Sleep, 37:1427-1437.
Lee H, Wang C, Deshmukh SS, Knierim JJ (2015) Neuronal population evidence of functional heterogeneity along the CA3 transverse axis: pattern completion versus pattern separation, Neuron, 87(5):1093-105
Ravindranath V, Dang HM, Goya RG, Mansour H, Nimgaonkar VL, Russell VA, Xin Y (2015) Regional research priorities in brain and nervous system disorders, Nature, 527:198-206.
Ravindranath, V. and Strobel H.W. (2013) Cytochrome P450-mediated metabolism in brain: functional roles and their implications, Expert Opin Drug Metab Toxicol, 9(5):551-558.
Karunakaran S, Ravindranath V. (2009) Activation of p38 MAPK in the substantia nigra leads to nuclear translocation of NF-kappaB in MPTP-treated mice: implication in Parkinson’s disease, J Neurochem., 109(6):1791-1799.
Saeed U, Karunakaran S, Meka DP, Koumar RC, Ramakrishnan S, Joshi SD, Nidadavolu P, Ravindranath V. (2009) Redox activated MAP kinase death signaling cascade initiated by ASK1 is not activated in female mice following MPTP: novel mechanism of neuroprotection, Neurotox Res., 16(2):116-126
Alcino J Silva, Yu Zhou, Thomas Rogerson, Justin Shobe, J Balaji (2009) Molecular and cellular approaches to memory allocation in neural circuits, Science, 326(5951):391-395.
Yu Zhou, Jaejoon Won, Mikael Guzman Karlsson, Miou Zhou, Thomas Rogerson, Jayaprakash Balaji, Rachael Neve, Panayiota Poirazi, Alcino J Silva (2009) CREB regulates excitability and the allocation of memory to subsets of neurons in the amygdala, Nature neuroscience, 12(11):1438-1443.
K.M. Sharika, Supriya Ray and Murthy A. (2009) Attention for Action during Error Correction, Progress in Brain Research, 176:227-244.
Murthy A, Ray S, Shorter SM, Schall JD,Thompson KG (2009) Neural Control of Visual Search by Frontal Eye Field: Effects of Unexpected Target Displacement on Visual Selection and Saccade Preparation, J. Neurophysiology, 101(5):2485-2507.
Feger BJ, Thompson JW, Dubois LG, Kommaddi RP, Foster MW, Mishra R, Shenoy SK, Shibata Y, Kidane YH, Moseley MA, Carnell LS, Bowles DE. (2016) Microgravity induces proteomics changes involved in endoplasmic reticulum stress and mitochondrial protection, Sci. Rep., 6:1-14
Ahmad F, Singh K, Das D, Gowaikar R, Shaw E, Ramachandran A, Rupanagudi KV, Kommaddi RP, Bennett DA, Ravindranath V (2017) Reactive Oxygen Species-Mediated Loss of Synaptic Akt1 Signaling Leads to Deficient Activity-Dependent Protein Translation Early in Alzheimer’s Disease, Antioxid Redox Signal, 27(16):1269-1280
Jean-Charles PY, Yu SM, Abraham D, Kommaddi RP, Mao L, Strachan RT, Zhang ZS, Bowles DE, Brian L, Stiber JA, Jones SN, Koch WJ, Rockman HA, Shenoy SK (2017) Mdm2 regulates cardiac contractility by inhibiting GRK2-mediated desensitization of β-adrenergic receptor signaling, JCI Insight, 2(17):1-17
Katti H, Peelen MV & Arun SP (2017) How do targets, nontargets, and scene context influencereal-world object detection?, Attention Perception and Psychophysics, 79:2021–2036
Goddard CA, Sridharan D*, Huguenard JR, Knudsen EI (2012) Gamma oscillations are generated locally in an attention-related midbrain network, Neuron, 73(3):567-580
Sridharan D*, Knudsen EI. (2015) Selective disinhibition: A unified neural mechanism for predictive and post hoc attentional selection, Vision Res, 116:194-209.
Marathe S, Jaquet M, Annoni J-M and Alberi L (2017) Jagged1 Is Altered in Alzheimer’s Disease and Regulates Spatial Memory Processing, Frontiers in Cellular Neuroscience, 11:1-11
Gopal Atul P. and Murthy A. (2015) Eye-hand coordination during a double-step task: evidence for a common stochastic accumulator, J. Neurophysiology, 114(3):1438-1454.
Gopal Atul PA, Jana Sumitash and Murthy A. (2017) Contrasting speed-accuracy tradeoffs for eye and hand movements reveal the optimal nature of saccade kinematics, J. Neurophysiology, 118(3):1664-1676
Sendnilnathan N., Basu D., and Murthy A. (2017) Simultaneous analysis of the LFP and spiking activity reveals essential components of a visuomotor transformation in the frontal eye field, Proc Natl Acad Sci U S A, 114 (24):6370-6375
Bhutani N., Sengupta S., Basu D., Prabhu N. and Murthy A. (2017) Parallel activation of prospective motor plans during visually-guided sequential saccades, European Journal of Neuroscience, 45:631-642
Pouget P, Murthy A, and Stuphorn V. (2017) Cortical control and performance monitoring of interrupting and redirecting movements, Philosophical Transactions of the Royal Soc., 372(1718)
Singh P., Ghosal A. and Murthy A. (2016) Exploration of joint redundancy but not task space variability facilitates supervised motor learning, Proc. Natl Acad. Sci. (USA), 113(50):14414-14419
Gopal Atul P. and Murthy A. (2016) A common control signal and a ballistic stage can explain the control of coordinated eye-hand movements, J. Neurophysiology, 115(5):2470-2484
Vaidhiyan N, Sundaresan R & Arun SP (2017) Neural dissimilarity indices that predict oddball detection in behaviour, IEEE Transactions on Information Theory,, 63(8):4778-4796
Saykally JN, Hatic H, Keeley KL, Jain S, Ravindranath V (2016) Citron BA: Withaniasomnifera Extract Protects Model Neurons from In Vitro Traumatic Injury, Cell Transplant, 26(7):1193–1201.
S Kumar, A Singh, VR Singh, JB George, J Balaji (2016) Saturation Dynamics Measures Absolute Cross Section and Generates Contrast within a Neuron, Biophysical Journal, 111 (6):1328-1336
Ratan Murty NA & Arun SP (2017) Effect of silhouetting and inversion on view invariance in the monkey inferotemporal cortex, Journal of Neurophysiology, 118:353–362
Ratan Murty NA & Arun SP (2017) A Balanced Comparison of Object Invariances in Monkey IT Neurons, eNeuro, 4(2):1-10
Ratan Murty NA & Arun SP (2017) Seeing a straight line on a curved surface: Decoupling of patterns from surfaces by single IT neurons, Journal of Neurophysiology, 117:104-116
Sumitash J, Gopal Atul PA, and Murthy A. (2017) Evidence of common and separate eye and hand accumulators underlying flexible eye-hand coordination , J. Neurophysiology, 117(1) : 348-364
Marathe S, Alberi L (2014) Monitoring Notch activity in the mouse., In Notch Signaling (pp. 115-129). Humana Press, New York, NY., 1187:115-129
Marathe S, Alberi L (2015) Notch in memories: points to remember, Hippocampus, 25(12):1481-1488.
Alberi L, Hoey SE, Brai E, Scotti AL, Marathe S (2013) Notch signaling in the brain: in good and bad times, Ageing Research Reviews, 12:801-814
Swananda Marathe, Lavinia Alberi (2014) Paradoxical effects of notch signaling in response to environmental enrichment during critical period: molecular mechanism underlying cognitive reserve?, AAIC2014,, 1187:115-129
Brai E*, Marathe S*, Astori S, Ben Fredj N, Perry E, Lamy C, Alberi L (2015) Notch1 regulates hippocampal plasticity through interaction with the Reelin pathway, glutamatergic transmission and CREB signaling., Frontiers in Cellular Neuroscience, 9:447.
Husain BF*, Nanavaty I*, Marathe S, Rajendran R, Vaidya VA (2015) Hippocampal transcriptional and neurogenic changes evoked by combination yohimbine and imipramine treatment, Progress in Neuropsychopharmacology and Biological Psychiatry, 61:1-9.
Marathe S, Liu S, Brai E, Kaczarowski M, Alberi L (2015) Notch signaling in response to excitotoxicity induces neurodegeneration via erroneous cell cycle re-entry., Cell Death and Differentiation, 22(11):1775-1784.
Brai E, Marathe S, Zentilin L, Giacca M, Nimpf J, Kretz R, Scotti A, Alberi L. (2014) Notch1 activity in the olfactory bulb is odour-dependent and contributes to olfactory behavior, European Journal of Neuroscience, 40(10):3436-49
I. Nanavaty, S. Marathe, V. Vaidya. (2012) Neurogenic effects of rapid action antidepressants, International journal of developmental neuroscience, 30:645
. Jhaveri DJ*, Nanavaty I*, Prosper BW, Marathe S, Husain BF, Kernie SG, Bartlett PF, Vaidya VA. (2014) hippocampusOpposing effects of α2- and β-adrenergic receptor stimulation on quiescent neural precursor cell activity and adult hippocampal neurogenesis, PLoS One, 9(6):1-11
Jhaveri DJ, Mackay EW, Hamlin AS, Marathe SV, Nandam LS, Vaidya VA, Bartlett PF (2010) Antidepressants that regulate norepinephrine levels activate stem and progenitor cells in the adult hippocampus via β3-adrenergic receptors, Journal of Neuroscience, 30(7):2795–2806
Yanpallewar SU*, Fernandes K*, Marathe SV*, Vadodaria KC, Jhaveri D, Rommelfanger K, Ladiwala U, Jha S, Muthig V, Hein L, Bartlett P, Weinshenker D, Vaidya VA (2010) α2-adrenoceptor blockade accelerates the neurogenic, neurotrophic, and behavioral effects of chronic antidepressant treatment, Journal of Neuroscience, 30(3):1096–1109
Ray A, Kambali M, Ravindranath V (2016) Thiol Oxidation by Diamide Leads to Dopaminergic Degeneration and Parkinsonism Phenotype in Mice: A Model for Parkinson’s Disease, Antioxid Redox Signal, 25(5):252-267.
Ahmad F, Singh K, Das D, Gowaikar R, Shaw E, Ramachandran A, Rupanagudi KV, Kommaddi RP, Bennett DA, Ravindranath V (2017) Reactive Oxygen Species-Mediated Loss of Synaptic Akt1 Signaling Leads to Deficient Activity-Dependent Protein Translation Early in Alzheimer’s Disease, Antioxid Redox Signal, 27(16):1269-1280.
A Singh, S Kumar, VP Singh, A Das, J Balaji (2017) Flavor Dependent Retention of Remote Food Preference Memory, Front. Behav. Neurosci., 11:1-17
S Maiti, SK Kaushalya, K Garai, J Balaji (2010) Fluorescence correlation microscopy with real-time alignment readout, US Patent, 7:1-12
Brian J Wiltgen, Miou Zhou, Ying Cai, J Balaji, Mikael Guzman Karlsson, Sherveen N Parivash, Weidong Li, Alcino J Silva (2010) The hippocampus plays a selective role in the retrieval of detailed contextual memories, Current Biology, 20(15):1336-1344.
Bidyut Sarkar, Anand Kant Das, Senthil Arumugam, Sanjeev Kumar Kaushalya, Arkarup Bandyopadhyay, Jayaprakash Balaji, Sudipta Maiti (2012) The dynamics of somatic exocytosis in monoaminergic neurons, Frontiers in physiology, 3:414.
A Singh, S Kumar, VP Singh, J Balaji (2013) Optical microscopy methods for understanding learning and memory, CURRENT SCIENCE, 105(11):1537-1548.
Miou Zhou, Weidong Li, Shan Huang, Juan Song, Ju Young Kim, Xiaoli Tian, Eunchai Kang, Yoshitake Sano, Cindy Liu, J Balaji, Shumin Wu, Yu Zhou, Ying Zhou, Sherveen N Parivash, Dan Ehninger, Lin He, Hongjun Song, Guo-li Ming, Alcino J Silva (2013) mTOR Inhibition ameliorates cognitive and affective deficits caused by Disc1 knockdown in adult-born dentate granule neurons, Neuron, 77(4):647-654.
Rafał Czajkowski, Balaji Jayaprakash, Brian Wiltgen, Thomas Rogerson, Mikael C Guzman-Karlsson, Alison L Barth, Joshua T Trachtenberg, Alcino J Silva (2014) Encoding and storage of spatial information in the retrosplenial cortex, Proceedings of the National Academy of Sciences, 111(23):8661-8666.
Yong-Seok Lee, Dan Ehninger, Miou Zhou, Jun-Young Oh, Minkyung Kang, Chuljung Kwak, Hyun-Hee Ryu, Delana Butz, Toshiyuki Araki, Ying Cai, J Balaji, Yoshitake Sano, Christine I Nam, Hyong Kyu Kim, Bong-Kiun Kaang, Corinna Burger, Benjamin G Neel, Alcino J Silva (2014) Mechanism and treatment for learning and memory deficits in mouse models of Noonan syndrome, Nature neuroscience, 17(12):1736-1743.
HJ Singh, VR Singh, SK Sikdar, B Jayaprakash, A Ghosh (2016) Circular Differential Two-Photon Luminescence from Helically Arranged Plasmonic Nanoparticles, ACS Photonics, 3(5):863-868
Thomas Rogerson, Balaji Jayaprakash, Denise J Cai, Yoshitake Sano, Yong-Seok Lee, Yu Zhou, Pallavi Bekal, Karl Deisseroth, Alcino J Silva (2016) Molecular and Cellular Mechanisms for Trapping and Activating Emotional Memories, PloS one, 11(8):1-24
Sripati AP & Olson CR (2010) Global image similarity in monkey inferotemporal cortex predicts human visual search performance, Journal of Neuroscience, 30(4):1258-1269.
Sripati AP & Olson CR (2010) Responses to compound objects in monkey inferotemporal cortex: The whole is equal to the sum of discrete parts, Journal of Neuroscience, 30(23):7948-7960.
Kim SS, Sripati AP & Bensmaia SJ (2010) Predicting the timing of spikes evoked by tactile stimulation of the hand. Journal of Neurophysiology, Journal of Neurophysiology, 104(3):1484-1496
Arun SP (2012) Turning visual search time on its head, Vision Research, 74:86-92.
Vaidhiyan N, Arun SP & Sundaresan R (2012) Active sequential hypothesis testing with application to a visual search problem, In 2012 IEEE International Symposium on Information Theory Proceedings (pp. 2201-2205). IEEE.:1-5
Mohan K & Arun SP (2012) Similarity relations in visual search predict rapid visual categorization, Journal of Vision, 12(11):1-24
Vighneshvel T & Arun SP (2013) Does linear separability really matter? Complex search is explained by simple search, Journal of Vision, 13(11):10-10.
Pramod RT & Arun SP (2014) Features in visual search combine linearly, Journal of Vision, 14(4):6-6.
Zhivago KA & Arun SP (2014) Texture discriminability in monkey inferotemporal cortex predicts human texture perception, Journal of Neurophysiology, 112(11):2745-2755.
Vighneshvel T & Arun SP (2015) Coding of relative size in monkey inferotemporal cortex, Journal of Neurophysiology, 113:2173-2179.
Ratan Murty NA & Arun SP (2015) Dynamics of 3d view invariance in monkey inferotemporal cortex, Journal of Neurophysiology, 113::2180-2194.
Zhivago KA & Arun SP (2016) Selective IT neurons are selective along many dimensions, Journal of Neurophysiology, 115:1512-1520
Pramod RT & Arun SP (2016) Object attributes combine additively in visual search, Journal of Vision, 16(5):1–29
Pramod RT & Arun SP (2016) Do computational models differ systematically from human object perception?, CVPR:1601-1609
Puneeth NC & Arun SP (2016) A neural substrate for object permanence in monkey inferotemporal cortex, Scientific Reports, 6:1-11
Sunder S & Arun SP (2016) Look before you seek: Preview adds a fixed benefit to all searches, Journal of Vision, 1-17
Deshmukh SS, Yoganarasimha D, Voicu H, Knierim JJ (2010) Theta modulation in the medial and the lateral entorhinal cortices., Journal of neurophysiology, 104(2):994-1006.
Deshmukh SS, Knierim JJ (2011) Representation of non-spatial and spatial information in the lateral entorhinal cortex., Frontiers in behavioral neuroscience, 5:1-33
Deshmukh SS*#, Johnson JL*, Knierim JJ (2012) Perirhinal cortex represents nonspatial, but not spatial, information in rats foraging in the presence of objects: Comparison with lateral entorhinal cortex., Hippocampus, 22(10):2045-2058.
Deshmukh SS#, Knierim, JJ (2013) Influence of local objects on hippocampal representations: landmark vectors and memory., Hippocampus, 23(4):253-267.
Knierim JJ, Neurnuebel JP, Deshmukh SS (2014) Functional correlates of the lateral and medial entorhinal cortex: Objects, path integration, and local-global reference frames, Philosophical Transactions of the Royal Society B: Biological Sciences, 369
Deshmukh SS (2014) Spatial and nonspatial representations in the lateral entorhinal cortex., In: Space, Time and Memory in the Hippocampal Formation, Springer, Vienna:127-152
Ceni C, Kommaddi RP, Thomas R, Vereker E, Liu X, McPherson PS, Ritter B, Barker PA (2010) The p75NTR intracellular domain generated by neurotrophin-induced receptor cleavage potentiates Trk signaling, J Cell Sci, 123(Pt13):2299-307
Kommaddi RP, Dickson KM, Barker PA (2011) Stress-induced expression of the p75neurotrophin receptor is regulated by O-GlcNAcylation of the Sp1 transcription factor, J Neurochem, 116(3):396-405
Kommaddi RP, Thomas R, Ceni C, Daigneault K, Barker PA (2011) Trk-dependent ADAM17 activation facilitates neurotrophin survival signaling, FASEB J, 25(6):2061-70
Kommaddi RP, Shenoy SK (2013) Arrestins and protein ubiquitination. Prog Mol Biol Transl Sci, 118:175-204
Han SO, Kommaddi RP, Shenoy SK (2013) Distinct roles for beta-arrestin2 and arrestin-domain-containing proteins in beta2 adrenergic receptor trafficking, EMBO Rep, 14(2):164-71
Kommaddi RP, Jean-Charles PY, Shenoy SK., (2015) Phosphorylation of the deubiquitinase USP20 by protein kinase A regulates post-endocytic trafficking of beta2 adrenergic receptors to autophagosomes during physiological stress, J Biol Chem, 290(14):8888-903
Sridharan D, Boahen K, Knudsen EI (2011) Space coding by gamma oscillations in the barn owl optic tectum, Journal of Neurophysiology, 105(5):2005-2017.
Sridharan D*, Knudsen EI. (2015) Gamma oscillations in the midbrain spatial attention network: linking circuits to function, Curr Opin Neurobiol, 31:189-198.
Sridharan D*, Ramamurthy DL, Knudsen EI. (2013) Spatial probability dynamically modulates visual target detection in chickens, Plos One, 8(5):1-12
Schwarz JS, Sridharan D*, Knudsen EI. (2013) Magnetic tracking of eye position in freely behaving chickens, Frontiers in Systems Neuroscience, 7:1-8
Sridharan D*, Ramamurthy DL, Schwarz JS, Knudsen EI. (2014) Visuospatial selective attention in chickens, Proceedings of the National Academy of Sciences, 111(19):E2056-E2065.
Sridharan D*, Schwarz JS, Knudsen EI. (2014) Selective attention in birds, Current Biology, 24(11):R510-513.
Sridharan D*, Steinmetz NA, Moore T, Knudsen EI. (2014) Distinguishing bias from sensitivity effects in multialternative detection tasks, Journal of Vision, 14(9):16-16.
Saeed U, Ray A, Valli RK, Kumar AM, Ravindranath V (2010) DJ-1 Loss by Glutaredoxin But Not Glutathione Depletion Triggers Daxx Translocation and Cell Death, Antioxidants & redox signaling, 13(2):127-144.
Sehgal N., Gupta, A., Khader Valli, R., Shanker Datt Joshi, Jessica T. Mills, Edith Hamel, Khanna, P., Jain, S. C., Thakur, S.S. and Ravindranath V (2012) Withania somnifera reverses Alzheimer’s disease pathology by enhancing low-density lipoprotein receptor-related protein in liver, Proc. Natl. Acad. Sci, 109(9):3510-3515.
Ahmad F, Nidadavolu P, Durgadoss L, Ravindranath V. (2014) Critical cysteines in Akt1 regulate its activity and proteasomal degradation: implications for neurodegenerative diseases, Free Radic Biol Med, 74:118-128.
Ray A, Sehgal N, Karunakaran S, Rangarajan G, Ravindranath V (2015) MPTP activates ASK1-p38 MAPK signaling pathway through TNF-dependent Trx1 oxidation in parkinsonism mouse model, Free Radic Biol Med, 87:312-325.
Li CL, Sathyamurthy A, Oldenborg A, Tank D and Ramanan N (2014) Glycogen synthase kinase-dependent axon growth is mediated by SRF-dependent transcription in CNS neurons, J Neurosci, 34(11):4027-4042.
Lu PPY and Ramanan N (2012) A critical cell-intrinsic role for serum response factor in glial specification in the CNS, J. Neurosci., 32(23):8012-8023.
Lin C, Hinde A, Burns CJ, Yin Y, Koppel A, Ma L, Blumenberg M, Khnykin D, Jahnsen FL, Crosby SD, Ramanan N, and Efimova T (2012) Serum Response Factor controls transcriptional network regulating epidermal function and hair follicle morphogenesis, J. Invest. Dermatol, 133(3):608-617.
Lu PPY and Ramanan N (2011) Serum Response Factor is required for cortical axon growth but is dispensable for neurogenesis and neocortical lamination, Journal of Neuroscience, 31(46):16651-16664.
Johnson AW, Rombag HS, Smith DR and Ramanan N (2011) Effects of serum response factor (SRF) deletion on conditioned reinforcement, Behavioural brain research, 220(2):312-318.
Ramakrishnan A, Chokhandre S, Murthy A. (2010) Voluntary control of multi-saccade gaze shifts during movement preparation and execution, J. Neurophysiology, 103(5):2400-2416.
Ray S and Maunsell JHR. (2010) Differences in gamma frequencies across visual cortex restrict their possible use in computation, Neuron, 67(5):885-896.
Ray S and Maunsell JHR (2011) Different origins of gamma rhythm and high-gamma activity in macaque visual cortex, PLoS Biology, 9(4):1-15
Ray S and Maunsell JHR (2011) Network rhythms influence the relationship between spike-triggered local field potential and functional connectivity, Journal of Neuroscience, 31(35):12674-12682.
Ni AM, Ray S and Maunsell JHR (2012) Tuned Normalization Explains the Size of Attention Modulations, Neuron, 73(4):803-813.
Ray S, Ni AM and Maunsell JHR. (2013) Strength of Gamma Rhythm depends on Normalization, PLoS Biology, 11(2):1-12
Srinath R and Ray S. (2014) Effect of Amplitude Correlations on Coherence in the Local Field Potential, Journal of Neurophysiology, 112(4):741-751
Ray S and Maunsell, JHR (2015) Do gamma oscillations play a role in cerebral cortex?, Trends in Cognitive Sciences, 19(2):78-85.
Ray S (2015) Challenges in the quantification and interpretation of spike-LFP relationships, Current Opinion in Neurobiology, 31:111-118.
Sharika KM, Ramakrishnan, A. and Murthy A. (2014) Use of exocentric and egocentric representations in the concurrent planning of sequential saccades, Journal of Neuroscience, 34(48):16009-16021.
Subhash Chandran K S, Mishra A, Shirhatti V and Ray S. (2016) Comparison of Matching Pursuit algorithm with other signal processing techniques for computation of the time-frequency power spectrum of brain signals, Journal of Neuroscience, 36(12):3399-3408
Shirhatti V, Borthakur A, and Ray S (2016) Effect of Reference Scheme on Power and Phase of the Local Field Potential, Neural Computation, 28(5):882-913.
Dubey A and Ray S (2016) Spatial Spread of local field potential is band-pass in the primate visual cortex, Journal of Neurophysiology, 116(4):1986-99
Sharika KM, and Murthy A. (2015) Contextual modulation during the planning of sequential saccades, Journal of Vision, 15(2):23-23.
Nelson M.J., Murthy A. and Schall J.D. (2016) Neural control of visual search by frontal eye field: chronometry of neural events and race model processes, J. Neurophysiology, 115(4):1954-69
Gopal Atul PA., Vishwanathan P. and Murthy A. (2015) A common stochastic accumulator with effector-dependent noise can explain eye-hand coordination, Journal of neurophysiology, 113(7):2033-2048.
Bhutani N, Sureshbabu Ramakrishnan, A. Farooqui A, Behari M, Goyal V, and Murthy A. (2013) Queuing of concurrent movement plans by basal ganglia, Journal of Neuroscience, 33(24):9985-9997
Ramakrishnan, A. and Murthy A. (2013) Brain Mechanisms for decision-making and motor control, Progress in Brain Research, 202:321-345.
Sharika KM, Neggers SF, Gutteling TP, Van der Stigchel S, Dijkerman HC, Murthy A. (2013) Proactive control of sequential saccades in human supplementary eye field, Proc Natl Acad Sci U S A., 110(14):1311-1320.
Bhutani N, Ray S, and Murthy A. (2012) Is saccade averaging determined by visual processing or movement planning?, Journal of neurophysiology, 108(12):3161-3171.
Ray S., Bhutani N and Murthy A. (2012) Mutual inhibition and capacity sharing during parallel preparation of serial eye movements, Journal of Vision, 12(3):17-17.
Ramakrishnan, A., Sureshbabu Ramakrishnan and Murthy A. (2012) Understanding how the brain changes its mind: microstimulation in the macaque frontal eye field reveals how saccade plans are changed, Journal of Neuroscience., 32(13):4457- 4472.
Ray S., Bhutani N., V. Kapoor and Murthy A. (2011) Trans-saccadic integration of visual and motor processing during sequential eye movements, Experimental Brain Research, 215(1):13-25.
Farooqui AA, Bhutani N, Kulashekhar S, Behari M, Goel V, Murthy A. (2011) Impaired conflict monitoring in Parkinson’s disease patients during an oculomotor redirect task, Exp Brain Res., 208(1):1-10.
