list of Publications
P Marathe, MS HS, D Nair, D Bhattacharyya, (2020), mEosBrite Are Bright Variants of mEos3.2 Developed by Semirational Protein Engineering,Journal of Fluorescence, 1-13
S Kedia, D Nair, (2020), Nanoscale Rearrangement of APP Organization as a Therapeutic Target for Alzheimer’s Disease, Medical Hypotheses, 110143
Sridevi Venkatesan, Sandhya Subramaniam, Premchand Rajeev, Yukti Chopra, Mini Jose and Deepak Nair, Differential scaling of synaptic molecules within functional zones of an excitatory synapse during homeostatic plasticity, eNeuro 17 March 2020, ENEURO.0407-19.2020; DOI: https://doi.org/10.1523/ENEURO.0407-19.2020
Shekhar Kedia, Pratyush Ramakrishna, Pallavi Rao Netrakanti, Mini Jose, Jean-Baptiste Sibarita, Suhita Nadkarni and Deepak Nair , Real-time Nanoscale Organization of Amyloid Precursor ProteinNanoscale, 2020, Accepted Manuscript https://doi.org/10.1039/D0NR00052C
Bella Koltun, Sivan Ironi, Noga Gershoni-Emek, Iliana Barrera, Mohammad Hleihil, Siddharth Nanguneri, Ranjan Sasmal, Sarit S Agasti, Deepak Nair, Kobi Rosenblum, (2020), Measuring mRNA translation in neuronal processes and somata by tRNA-FRET, Nucleic Acids Research, , gkaa042.
Reddy Peera Kommaddi, Deepika Singh Tomar, Smitha Karunakaran, Deepti Bapat, Siddharth Nanguneri, Ajit Ray, Bernard L Schneider, Deepak Nair, Vijayalakshmi Ravindranath, Glutaredoxin1 Diminishes Amyloid Beta-Mediated Oxidation of F-Actin and Reverses Cognitive Deficits in an Alzheimer's Disease Mouse Model, Antioxidants & Redox Signaling 31 (18), 1321-1338
S Nanguneri, RT Pramod, N Efimova, D Das, M Jose, T Svitkina, D Nair, Characterization of nanoscale organization of F-actin in morphologically distinct dendritic spines in vitro using supervised learning, eNeuro 6 (4)
Bella Koltun, Sivan Ironi, Noga Gershoni-Emek, Iliana Barrera, Mohammad Hleihil, Siddharth Nanguneri, Ranjan Sasmal, Sarit S Agasti, Deepak Nair, Kobi Rosenblum, (2019), Measuring mRNA translation in neuronal processes and somata by tRNA-FRET, bioRxiv, 646216
Muthukumaran Venkatachalapathy, Vivek Belapurkar, Mini Jose , Arnaud Gautier and Deepak Nair, (2019), Live cell super resolution imaging by radial fluctuations using fluorogen binding tags, Nanoscale 11 (8), 3626-3632
Reddy Peera Kommaddi, Debajyoti Das, Smitha Karunakaran, Siddharth Nanguneri,Deepti Bapat,Ajit Ray,Eisha Shaw,David A. Bennett,Deepak Nair,and Vijayalakshmi Ravindranath, (2018), Aβ mediates F-actin disassembly in dendritic spines leading to cognitive deficits in Alzheimer’s disease, J Neuroscience, 38(5):, 1085–1099
Darius Widera, Christin Klenke, Nair D, Meike Heidbreder, Sebastian Malkusch, Jean-Baptiste Sibarita, Daniel Choquet, Barbara Kaltschmidt, Mike Heilemann, Christian Kaltschmidt, (2016), Single-particle tracking uncovers dynamics of glutamate-induced retrograde transport of NF-κB p65 in living neurons, Neurophotonics, , 3(4) , 041804-041804.
Callista B. Harper, Andreas Papadopulos, Sally Martin, Daniel R. Matthews, Garry P. Morgan, Tam H. Nguyen, Tong Wang, Nair D, Daniel Choquet & Frederic A. Meunier, (2016), Botulinum neurotoxin type-A enters a non-recycling pool of synaptic vesicles, Scientific reports, Sci Rep 6, , srep19654
Mini Jose, Sylvain Tollis, Nair D, Romain Mitteaua, Christophe Velours, Aurelie Massoni-Laporte, Anne Royou, Jean-Baptiste Sibarita, and Derek McCusker, (2015), A quantitative imaging-based screen reveals the exocyst as a network hub connecting endocytosis and exocytosis, Molecular biology of the cell, 26, 2519-2534
Anaël Chazeau, Amine Mehidi, Nair D, Jérémie J Gautier, Cécile Leduc, Ingrid Chamma, Frieda Kage, Adel Kechkar, Olivier Thoumine, Klemens Rottner, Daniel Choquet, Alexis Gautreau, Jean‐Baptiste Sibarita, Grégory Giannone, (2014), Nanoscale segregation of actin nucleation and elongation factors determines dendritic spine protrusion, The EMBO journal, 33, 2745-2764
Jose M, Tollis S, Nair D, Sibarita JB, McCusker D., (2013), Robust polarity establishment occurs via an endocytosis-based cortical corralling mechanism, J Cell Biol, 407-418, jcb. 201206081
Nair D, Hosy E, Petersen JD, Constals A, Giannone G, Choquet D, Sibarita JB., (2013), Super-resolution imaging reveals that AMPA receptors inside synapses are dynamically organized in nanodomains regulated by PSD95, Journal of Neuroscience, 33 , 13204-13224
Adel Kechkar, Nair D, Mike Heilemann, Daniel Choquet, Jean-Baptiste Sibarita, (2013), Real-time analysis and visualization for single-molecule based super-resolution microscopy, PLoS One, 8, e62918
Vincent Fraisier , Amal Kasri , Stéphanie Miserey-Lenkei, Jean-Baptiste Sibarita, Nair D, Adeline Mayeux, Sabine Bardin, Yusuke Toyoda, Ina Poser, Andrei Poznyakovskiy, Bruno Goud, Anthony A. Hyman, Ariane Dimitrov, (2013), C11ORF24 is a novel type I membrane protein that cycles between the Golgi apparatus and the plasma membrane in Rab6-positive vesicles, Public Library of Science, doi:10.1371, 8, e82223
Izeddin I, Boulanger J, Racine V, Specht CG, Kechkar A, Nair D, Triller A, Choquet D, Dahan M, Sibarita JB., (2012), Wavelet analysis for single molecule localization microscopy, Optics express, 20, 2081-2095
Heidbreder M, Zander C, Malkusch S, Widera D, Kaltschmidt B, Kaltschmidt C, Nair D, Choquet D, Sibarita JB, Heilemann M. Olivier Rossier, Vivien Octeau, Jean-Baptiste Sibarita, Cécile Leduc, Béatrice Tessier, Nair D, Volker Gatterdam, Olivier Destaing, Corinne Albigès-Rizo, Robert Tampé, Laurent Cognet, Daniel Choquet, Brahim Lounis & Grégory Giannone, (2012), Integrins β1 and β3 exhibit distinct dynamic nanoscale organizations inside focal adhesions, Nature cell biology, 14, , 1057-1067
Hoze N, Nair D, Hosy E, Sieben C, Manley S, Herrmann A, Sibarita JB, Choquet D, Holcman D., (2012), Heterogeneity of AMPA receptor trafficking and molecular interactions revealed by superresolution analysis of live cell imaging, Proceedings of the National Academy of Sciences, 109, 17052-17057
Heidbreder M1, Zander C, Malkusch S, Widera D, Kaltschmidt B, Kaltschmidt C, Nair D, Choquet D, Sibarita JB, Heilemann M., (2012), TNF-α influences the lateral dynamics of TNF receptor I in living cells, Biochimica et Biophysica Acta (BBA)-Molecular Cell Research, 1823, 1984-1989
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